Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211501g00005 ATGGAAAAGGCCCTCGCAGCCGTCCTGGCCGCCATCGGCACCTTCATCGTCGTTACCCTCCTCTTCGCCATCCTCATCCTCCTCTGCCAGCGCCGCAAGACCAAGACCTCCACGCTTCCAACCCGCCAAAACAATCCAACCCGAACCCGACCCGTGCCAGACCCTAACCACTCATCCGTCTCCATCGTCGACGCCAGCTGGTCCTACGATCCCAACCTCAAGATCTCCCTCGCGGAGCTCGCACGCGCCACCGACAACTTCTCCCCTCACCTCATCGTCGGCGACGGCAGCTTCGGCCTCGTCTATAAGGCCCGCCTCAACAACGGCACCCTCGTCGCCGTCAAGAAGCTCTCTCCGGACGCCTTCCAAGGCTTCCGCGAGTTCCAGGCCGAGATGGAAACCCTAAGCAAGCTCGACCACCCAAACATCGTCAAGATCCTCGGCTACTGGTCCTCCGGCCCGGAACGCTTACTCGTCTACGAGTTCATCGAACGTGGAAACCTCGATCAGTGGCTCCACGAGCCCACCACTGGGCCCGAAGCCCAAGAATCCCTCAGCGACCTCCGTTTACCCCTGTCATGGGAAACCAGGGTCAACATCATCAGAGGCGTGGCTCATGGGCTTTGCTACCTCCACGGGCTTGAAAAGCCCATTATACACAGGGACATCAAGGCTAGTAACGTTTTATTGGACTCCGAATTCAAGGCCCATATAGCTGATTTCGGGCTTGCCCGGAGGATTGACACATCTAAATATTCACACGTGTCAACGCAGTTTGCCGGGACCATGGGCTACATGCCCCCGGAGTATGTGGCTGGGGCCAATGTGGCTAACCAGAAGGTGGATGTGTATAGCTTTGGGATTTTAATGCTTGAGACGGGCTCAGGGCGCAGGCCCAATTTGCCTGTGAAGATGGGGGAGGAAGATATTGGGCTGGTCCATTGGGCCAGGAAGATGAAGGAGAGGAGTTCTGAGATGGATGTTGTTGATGTGAATATTTCAAAGGAAGGTTTAAGGGAAGAGAGTGTTAAAGAGTATGTGAGGATTGCTTGCATGTGCACTGGGGAGTTGCAGAAGGAGAGGCCTGAGATGCCTGAGGTTGTTAACTTGTTGGACTCCATGCCGCTCTGA 1131 0.5606 MEKALAAVLAAIGTFIVVTLLFAILILLCQRRKTKTSTLPTRQNNPTRTRPVPDPNHSSVSIVDASWSYDPNLKISLAELARATDNFSPHLIVGDGSFGLVYKARLNNGTLVAVKKLSPDAFQGFREFQAEMETLSKLDHPNIVKILGYWSSGPERLLVYEFIERGNLDQWLHEPTTGPEAQESLSDLRLPLSWETRVNIIRGVAHGLCYLHGLEKPIIHRDIKASNVLLDSEFKAHIADFGLARRIDTSKYSHVSTQFAGTMGYMPPEYVAGANVANQKVDVYSFGILMLETGSGRRPNLPVKMGEEDIGLVHWARKMKERSSEMDVVDVNISKEGLREESVKEYVRIACMCTGELQKERPEMPEVVNLLDSMPL 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211501g00005 376 FunFam Phytosulfokine receptor 2 48 162 - -
Stsc211501g00005 376 Gene3D Phosphorylase Kinase; domain 1 54 162 - -
Stsc211501g00005 376 SMART serkin_6 87 371 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211501g00005 376 Pfam Protein tyrosine and serine/threonine kinase 93 370 IPR001245 GO:0004672|GO:0006468
Stsc211501g00005 376 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 3 373 - -
Stsc211501g00005 376 CDD STKc_IRAK 93 374 - -
Stsc211501g00005 376 MobiDBLite consensus disorder prediction 36 57 - -
Stsc211501g00005 376 SUPERFAMILY Protein kinase-like (PK-like) 62 371 IPR011009 -
Stsc211501g00005 376 Gene3D Transferase(Phosphotransferase) domain 1 163 375 - -
Stsc211501g00005 376 ProSitePatterns Serine/Threonine protein kinases active-site signature. 218 230 IPR008271 GO:0004672|GO:0006468
Stsc211501g00005 376 FunFam Phytosulfokine receptor 2 163 375 - -
Stsc211501g00005 376 ProSiteProfiles Protein kinase domain profile. 87 376 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211501g00005 376 ProSitePatterns Protein kinases ATP-binding region signature. 93 116 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211501g00005 Stsc-Chr211501 15420 16550 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211501g00005 71 371 Receptor kinase-like Gene Family AT5G07280 46.026 7.02e-72 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Stsc211501g00005 PK_Tyr_Ser-Thr 5e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211501g00005 - - psat:127091132 538.11