Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211501g00004 ATGGCGGTTTCTGATCATCTTGAGCGTGACCGCAACCACAGCACTTCGCCCAATACCTACACAACGGCCACCGTTCACCGGAAACCCTCTTATCCGGCGCCGGCGGGGGACTTATCTTTCTACCGGAAACCTATATTGTTAGCATTGGAGGATCGTCCGTTCCATTTGCGCTGCCACAGGTTTGAACCTTTTAATAGCGTTCTAGGTTTCTACACCATTGTTAATTTTCTCTTCTTCGTGAAAGATGTGACCTTTGGAGGTGAATCTGGCTCCAAACTTGTTGTAAGCGTTTCAGCGGTTACTCGGATGGATCCTAATGTAGAAGAAGAGTTGCCCCAATACATACATATAAATCAGAATGAATTTTTGATACGAAGGCATAAGAAGCAGAAAGAGGAGGATATTGCTATATGTGAATGCAAATATAATGTTGACGACCCTGATAGTGCATGTGGGGACAGCTGCCTCAATGTTTTAACCAGCACTGAATGCACTCCTGGTTATTGCCCATGCGGTGACCTCTGTAAAAATCAGAGATTTCAGAAGTGTGAGTATGCAAAAACAAAGTTGTTTAAAACTGAAGGCCGTGGGTGGGGTCTTTTGGCTGATGAGAACATTAAGGCGGGACAATTTGTCATTGAATACTGTGGAGAAGTAATATCATGGAAAGAAGCCAAACGTAGATCCCAGGCTTATGAAATTCAAGGTCTAACAGATGCATTTATCATTTGCCTTAATGCCTCTGAATCTATTGATGCAACAAGAAAGGGAAGTCTTGGCAGATTTATAAATCATTCCTGTCAACCAAACTGTGAGACAAGAAAATGGAATGTCTTGGGCGAAATAAGAGTTGGAATATTTGCAAAACATGATATTCCTTTTGGAGCTGAATTGGCATATGACTATAATTTTGAATGGTTTGGAGGTGCAAAGGTTCGTTGCCTCTGTGGTGCAGCTAGATGTTCTGGATTTCTTGGAGCAAAATCTCGTGGTTTCCAGGAAGATACATATCTATGGGAAGATGATGATGAAAGGTACTCTGTTGAGAAAATTCCTGTATATGACTCTGCAGAGGATGAAATGGGGACAGAAGTTCTTAAACGCATGAGCTTAGAGAGTTCTGCAAATTATTTTAATGGAAGAATAGGACCCTCCATGGATAACACACTAAAAGCTGTGCAGCTATCAGATTCCGGTGCTTTCAGCATTCCCCTTGACTTGGCCCAAATGAAGGATTTAGACGTCAAGAAGATTAAAACTGAAGTAGTAAGCGAGGATATGAAATTGGATTCTGAAGATACTGAACAGGCATTCTCCCAAAAGAATGCAATGATCTCGCGTATCCGAAGTAACACTGCTGCCAGAAACTATCACCTTGGACCTCGGTCCATGTCTACTAAACGGACCAAGGGACATAGAGGCAGAAAGTTAAAAAATCTTGTACAGAAGGAAGTTGATGTCAAGTTTGCAGCTGGGCTCTTGGCTTCAAAGGCGGCACAAGAGGAGATTCTAAAATATGAGGAAGTAAAGAATAACGCTGCTTCTGATCTGGATTCCTTATACGATGAAATAAGGCCAGCCATTGAAGAACACGAGAGAGATAGCCAAGACAGTGTATCTACCTCTGTAGCAGAGAAGTGGATTCAAGCTTGCTGCCTAAAATTGAAGGCAGAGTTTGATCTTTACTCCTCAATTATAAAAAATGTGGCTTGCACTGCTCAAAGGGCTAAACCTCCCCCAGAAGCTGATAATGGAAACGAAATTAAGCTGTTGACGGGTTGA 1782 0.4226 MAVSDHLERDRNHSTSPNTYTTATVHRKPSYPAPAGDLSFYRKPILLALEDRPFHLRCHRFEPFNSVLGFYTIVNFLFFVKDVTFGGESGSKLVVSVSAVTRMDPNVEEELPQYIHINQNEFLIRRHKKQKEEDIAICECKYNVDDPDSACGDSCLNVLTSTECTPGYCPCGDLCKNQRFQKCEYAKTKLFKTEGRGWGLLADENIKAGQFVIEYCGEVISWKEAKRRSQAYEIQGLTDAFIICLNASESIDATRKGSLGRFINHSCQPNCETRKWNVLGEIRVGIFAKHDIPFGAELAYDYNFEWFGGAKVRCLCGAARCSGFLGAKSRGFQEDTYLWEDDDERYSVEKIPVYDSAEDEMGTEVLKRMSLESSANYFNGRIGPSMDNTLKAVQLSDSGAFSIPLDLAQMKDLDVKKIKTEVVSEDMKLDSEDTEQAFSQKNAMISRIRSNTAARNYHLGPRSMSTKRTKGHRGRKLKNLVQKEVDVKFAAGLLASKAAQEEILKYEEVKNNAASDLDSLYDEIRPAIEEHERDSQDSVSTSVAEKWIQACCLKLKAEFDLYSSIIKNVACTAQRAKPPPEADNGNEIKLLTG 593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211501g00004 593 FunFam Histone-lysine N-methyltransferase 100 338 - -
Stsc211501g00004 593 SUPERFAMILY SET domain 110 323 IPR046341 -
Stsc211501g00004 593 MobiDBLite consensus disorder prediction 1 27 - -
Stsc211501g00004 593 ProSiteProfiles SET domain profile. 186 303 IPR001214 GO:0005515
Stsc211501g00004 593 ProSiteProfiles AWS domain profile. 133 184 IPR006560 GO:0005634|GO:0042054
Stsc211501g00004 593 Gene3D SET domain 93 339 IPR046341 -
Stsc211501g00004 593 PANTHER SET DOMAIN PROTEINS 109 574 - -
Stsc211501g00004 593 SMART set_7 186 309 IPR001214 GO:0005515
Stsc211501g00004 593 Pfam AWS domain 145 183 IPR006560 GO:0005634|GO:0042054
Stsc211501g00004 593 SMART shorttest3 133 185 IPR006560 GO:0005634|GO:0042054
Stsc211501g00004 593 MobiDBLite consensus disorder prediction 574 593 - -
Stsc211501g00004 593 Pfam SET domain 197 303 IPR001214 GO:0005515
Stsc211501g00004 593 ProSiteProfiles Post-SET domain profile. 310 326 IPR003616 -
Stsc211501g00004 593 SMART PostSET_3 310 326 IPR003616 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211501g00004 Stsc-Chr211501 7327 14688 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211501g00004 168 325 C2H2 Transcription Factor Family AT2G23740 34.807 1.20e-20 95.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Stsc211501g00004 SET 3.5e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211501g00004 - - gmx:100804657 783.867