Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211499g00009 ATGAAGTCCGCTACCACCAACATGGCTCAGCCGCAGAGTAATTGGGAGGCTGATAAAATGCTTGATGTCTACATCCATGATTATTTTGTAAAGAGAAAATTACACAACACTGCAAAAGCTTTTATGACAGAAGGCAAAGTTTCCACCGATCCCGTAGCAATTGATGCACCTGGAGGATTTCTGTATGAGTGGTGGTCTGTCTTTTGGGATGTCTTCATCTCAAGGACAAATGAGAAACATTCTGAGGCTGCTGCCGCTTACATTGAGACCCAACAAATGAAGGCCAGAGAACAACAACTTCAGATGCAGCAATTGCAACTTATGCAGCAGCGTGGTGCACAGCTGCAACGACGGGATCCTAATCATCCTCCACTAGGCGGTTCCTTAAATGCCATGAACTCTGAAGGAATGTTGGGGCAGCCACCAACAAGTGTTTTGGCCATGAAAATGTATGAAGACCGAATGAAACACTCTCATTCAATGGAATCAGATGCATCTCCAACCCTTATTGATGCAAATAGGATGGCCCTTCTTAAATCTGGAACAAGTCATCAAGGTCAGTTGGTCCATGGTAATTCAGGAAATATGTCTACTGCATTGCAGCAACTTCAGGCCCGGACTCCTTTGACAACTGATATCAAAGCAGAAGTAAATTTAGGTGCCACTCCAAAGAGTTTGCCTATGGATAACTCAGTTTACAGGCAAGCAATTTTACAATCAAAATCTGGGCTAGGCGGTGCAGGGTTAAATCCAGGAGTTACAAGTCTTCCACTAAAGGGGTGGCCTTTAACTGGTATTGATCAACTAAGACCTGGTGGTTTGGGCGTACAAGTTCAGAAGCCTAATTTGACAACTCAAAGCCAGTTTCTTTTGGCATCACAACAGCAGCAAGTCTTAGCACAGGCTCAGGCACAAAACAACCTTGGAAGTTCTAATAGTCAAGGTGATATGGATCCACATAGACTTTCTGCTGTCCCTCGAGGTGGTTTAAGTGCAAAAGATGGTCAATCTACCAGCTCTCAAGTGCAGTCAGGTTCACCCAAGCAGATGAAGATGTCCCAGGCACAACATTCACTATCTCAACAGGATCATTTACAGCAGCAGCAACTGCAGCAGAACAACCGAAAAAGGAAACAACATTCTTCTTCTGGACCTGCCAATAGCACTGGTACTGGAAACACAGCAGGTCCTTCGCCTAATTCACCACCATCAACTCACACACCTGGTGATGGAATAAATACAGCAAGCAGCATTCAGCATGTTAACAGTATGCCTAAGAGCATGATGATGTATGGTACAGAAGCGACAGGTGGCCTTGCATCATCTTCTAATTTGCTTCAGGAGGACATCGACCGATTTGGAGATGTTGGTACTTTAGAGGATAATGTGGAATCCTTTCTATCAAATGATGGAGGAGATGAAGGTAGTCTGTATGGAAGTATAAAACAAAATCCAGCTGAGCAACAAAAAGAACCTTCAAAAGGCTTCACCTTTGCTGAATTTGGTTGCATAAGAACAAGGAACAGCAAAGTTACTTGCTGTCACTTTTCATCTGATGGAAAAATGCTTGCCAGTGCTGGACATGACAACAAGGTTGTCCTTTGGAACATGGACACTTTACAGACAGAGAGCACTCCTGAAGAACACAAGATGGTTATTTCAGATGTCCGTTTTAGACCAAATTCATCTCAGTTGGCAACAGCCTCAATCGATAAATCTGTGCGGTTATGGGATGCAGCTAATCCAAGCTATTGTGTGCAAGAATACGGTGGACACAGTGCAGAAATTATGTCTCTTGATTTCCACCCTAAGAAGACTGAGATTTTCTGCTTTTGTGATAGTGAAAATGCAATTCGGTATTATAATATTACTTCATCCTCCTGCATCCATGTATTGAAGGGTGGAAATGCACAAGTGAGGTTTCAGCCTAGAGTGGGACAAGTACTAGCTGCAGCTTCTGATAAATTAGTGTCAATTTTTGATGTTGAAACCCACAGACAAATTTATTCACTCCAGGGACACCCTGAAGCGGTGAACTATATTTGCTGGGATTCGACTGGAGATTTCTTGGCAACTGTAAGTCAAAATTTGGTGAAGATTTGGACACTGGCCTCAGGAGAATGCATTCAGGAGCTTGGCGCAAATGCGAACCAGTTCCATTCTTGTGTCTTTCATCCAAGCTATTCAACTTTATTGGTGATTGGCGGGTTTTCGTCCTTGGAACTGTGGAACATGGCTGAGAACAAAAGCATGACGATTTCGGCACACGAAAATATAATTTCTGCTTTGGCTCAATCTCCTGTAACTGGAATGGTGGCCTCTGCAAGCCATGACTGCTCTGTTAAGTTGTGGAAATAA 2358 0.4338 MKSATTNMAQPQSNWEADKMLDVYIHDYFVKRKLHNTAKAFMTEGKVSTDPVAIDAPGGFLYEWWSVFWDVFISRTNEKHSEAAAAYIETQQMKAREQQLQMQQLQLMQQRGAQLQRRDPNHPPLGGSLNAMNSEGMLGQPPTSVLAMKMYEDRMKHSHSMESDASPTLIDANRMALLKSGTSHQGQLVHGNSGNMSTALQQLQARTPLTTDIKAEVNLGATPKSLPMDNSVYRQAILQSKSGLGGAGLNPGVTSLPLKGWPLTGIDQLRPGGLGVQVQKPNLTTQSQFLLASQQQQVLAQAQAQNNLGSSNSQGDMDPHRLSAVPRGGLSAKDGQSTSSQVQSGSPKQMKMSQAQHSLSQQDHLQQQQLQQNNRKRKQHSSSGPANSTGTGNTAGPSPNSPPSTHTPGDGINTASSIQHVNSMPKSMMMYGTEATGGLASSSNLLQEDIDRFGDVGTLEDNVESFLSNDGGDEGSLYGSIKQNPAEQQKEPSKGFTFAEFGCIRTRNSKVTCCHFSSDGKMLASAGHDNKVVLWNMDTLQTESTPEEHKMVISDVRFRPNSSQLATASIDKSVRLWDAANPSYCVQEYGGHSAEIMSLDFHPKKTEIFCFCDSENAIRYYNITSSSCIHVLKGGNAQVRFQPRVGQVLAAASDKLVSIFDVETHRQIYSLQGHPEAVNYICWDSTGDFLATVSQNLVKIWTLASGECIQELGANANQFHSCVFHPSYSTLLVIGGFSSLELWNMAENKSMTISAHENIISALAQSPVTGMVASASHDCSVKLWK 785
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211499g00009 785 ProSiteProfiles Trp-Asp (WD) repeats profile. 753 785 IPR001680 GO:0005515
Stsc211499g00009 785 MobiDBLite consensus disorder prediction 307 417 - -
Stsc211499g00009 785 Pfam LisH 19 45 IPR006594 GO:0005515
Stsc211499g00009 785 PRINTS G protein beta WD-40 repeat signature 523 537 IPR020472 -
Stsc211499g00009 785 PRINTS G protein beta WD-40 repeat signature 772 785 IPR020472 -
Stsc211499g00009 785 PRINTS G protein beta WD-40 repeat signature 565 579 IPR020472 -
Stsc211499g00009 785 CDD WD40 508 785 - -
Stsc211499g00009 785 Gene3D - 641 785 IPR015943 GO:0005515
Stsc211499g00009 785 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 753 785 - -
Stsc211499g00009 785 ProSitePatterns Trp-Asp (WD) repeats signature. 523 537 IPR019775 -
Stsc211499g00009 785 MobiDBLite consensus disorder prediction 469 493 - -
Stsc211499g00009 785 Coils Coil 88 108 - -
Stsc211499g00009 785 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 546 578 - -
Stsc211499g00009 785 MobiDBLite consensus disorder prediction 332 417 - -
Stsc211499g00009 785 Gene3D - 493 640 IPR015943 GO:0005515
Stsc211499g00009 785 SUPERFAMILY WD40 repeat-like 502 785 IPR036322 GO:0005515
Stsc211499g00009 785 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 8 785 IPR044716 GO:0003714
Stsc211499g00009 785 SMART Lish 17 49 IPR006594 GO:0005515
Stsc211499g00009 785 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 504 539 - -
Stsc211499g00009 785 ProSiteProfiles Trp-Asp (WD) repeats profile. 504 545 IPR001680 GO:0005515
Stsc211499g00009 785 ProSiteProfiles Trp-Asp (WD) repeats profile. 546 578 IPR001680 GO:0005515
Stsc211499g00009 785 Pfam WD domain, G-beta repeat 667 701 IPR001680 GO:0005515
Stsc211499g00009 785 Pfam WD domain, G-beta repeat 509 536 IPR001680 GO:0005515
Stsc211499g00009 785 Pfam WD domain, G-beta repeat 749 785 IPR001680 GO:0005515
Stsc211499g00009 785 Pfam WD domain, G-beta repeat 545 578 IPR001680 GO:0005515
Stsc211499g00009 785 ProSiteProfiles LIS1 homology (LisH) motif profile. 17 49 IPR006594 GO:0005515
Stsc211499g00009 785 SMART WD40_4 705 744 IPR001680 GO:0005515
Stsc211499g00009 785 SMART WD40_4 746 785 IPR001680 GO:0005515
Stsc211499g00009 785 SMART WD40_4 664 702 IPR001680 GO:0005515
Stsc211499g00009 785 SMART WD40_4 497 536 IPR001680 GO:0005515
Stsc211499g00009 785 SMART WD40_4 625 661 IPR001680 GO:0005515
Stsc211499g00009 785 SMART WD40_4 582 622 IPR001680 GO:0005515
Stsc211499g00009 785 SMART WD40_4 539 578 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211499g00009 Stsc-Chr211499 100161 110616 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211499g00009 522 770 U-box Gene Family AT2G33340 28.295 6.21e-17 82.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Stsc211499g00009 WD40 0.006 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211499g00009 - - qsa:O6P43_016844 1157.9