Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211499g00006 ATGGGTTGCTTTTCATGTTTTTCAAGCCATGAAAACAAGACAGAACAGAGGTCAAGGAGGAGTAATAATAATCAAACACAACATCAACCTCTCAAGGACGTAGCCAAACATCATCTTCATCATAATCAAAATAATAATAATTACCAGAACAAGGGAAGGGGAGCCCCACAAACAGAAGGTAAAATATTAAATAAAGAAGGCAATAATAAAGACACAGGGAACCATAACATTGCAGCACAAACATTCACTTTTCGTGAATTAGCTGCTATTACAAAGAACTTTAGGCAAGAGTTCCTAATAGGTGAAGGTGGATTTGGAAGGGTTTATAGAGGAAGACTTGAAAAGACAAACCAAGAAGTAGCTGTAAAACAACTTGATAGAAATGGATTGCAAGGGAACAGAGAGTTTCTTGTTGAAGTGTTAATGTTAAGTTTGTTACACCATGAGAATCTAGTGAATCTAATTGGATATTGTGCTGATGGAGATCAAAGACTATTAGTGTATGAGTATATGGCATTGGGATCTCTTGAGGATCATCTACTAGATATTCATCCCCAACAAAAGCCATTAGATTGGTTGAAAAGAATGAAAATAGCATTACATGCTGCAAAAGGGCTAGAATACCTACATGACAAAGCCAATCCACCAGTTATCTACCGTGACTTAAAATCCTCAAATATTTTGCTGGATAGGGATTACAATGCAAAACTCTCGGATTTTGGACTCGCAAAGCTCGGACCAACTGGGGACAAGACTCATGTGTCTTCAAGAGTGATGGGAACTTATGGATATTGCGCTCCAGAGTATCAAAGAACTGGCCAACTTACCGTAAAATCTGATGTTTATAGTTTCGGCGTTGTGTTACTTGAATTGATCACCGGAAGGAGAGCCATTGATAATACTAGACATGCAAGGGAGCAAACCCTAGTTACGTGGGCAAATCCAGTGTTCAAGGAGCCAAACAGATACCCAGAACTAGCAGATCCCCTTCTAGAAGGAAAGTACCCATTGAGATCATTACACCAAGCAGTGGCAGTAGCAGCCATGTGCCTTAATGAAGAACCAGAAGTGAGGCCATTAATCAGTGATGTTGTAACTGCCCTCAGTTTCTTACCATTAGACCAAGATAGTAATAATAATAATAATATTTCACCAATTGAAACGCCTTCTCCACCACCACCTGCTGTTACTTTTAATTTAATGGATGATGATAGCATTGCTGAGCGACAAAGAGCTGTTGCTGACGCCATTGAATGGGTTTCCAATAATAACACAAGGAAATAA 1284 0.3902 MGCFSCFSSHENKTEQRSRRSNNNQTQHQPLKDVAKHHLHHNQNNNNYQNKGRGAPQTEGKILNKEGNNKDTGNHNIAAQTFTFRELAAITKNFRQEFLIGEGGFGRVYRGRLEKTNQEVAVKQLDRNGLQGNREFLVEVLMLSLLHHENLVNLIGYCADGDQRLLVYEYMALGSLEDHLLDIHPQQKPLDWLKRMKIALHAAKGLEYLHDKANPPVIYRDLKSSNILLDRDYNAKLSDFGLAKLGPTGDKTHVSSRVMGTYGYCAPEYQRTGQLTVKSDVYSFGVVLLELITGRRAIDNTRHAREQTLVTWANPVFKEPNRYPELADPLLEGKYPLRSLHQAVAVAAMCLNEEPEVRPLISDVVTALSFLPLDQDSNNNNNISPIETPSPPPPAVTFNLMDDDSIAERQRAVADAIEWVSNNNTRK 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211499g00006 427 Pfam Protein kinase domain 97 365 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211499g00006 427 MobiDBLite consensus disorder prediction 1 28 - -
Stsc211499g00006 427 SMART serkin_6 94 371 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211499g00006 427 Gene3D Transferase(Phosphotransferase) domain 1 171 387 - -
Stsc211499g00006 427 FunFam Serine/threonine-protein kinase PBS1 67 170 - -
Stsc211499g00006 427 FunFam Serine/threonine-protein kinase PBS1 171 385 - -
Stsc211499g00006 427 CDD STKc_IRAK 100 368 - -
Stsc211499g00006 427 PANTHER OS07G0668900 PROTEIN 3 378 - -
Stsc211499g00006 427 PIRSF ILK 15 380 - -
Stsc211499g00006 427 SUPERFAMILY Protein kinase-like (PK-like) 80 399 IPR011009 -
Stsc211499g00006 427 Gene3D Phosphorylase Kinase; domain 1 64 170 - -
Stsc211499g00006 427 ProSiteProfiles Protein kinase domain profile. 94 371 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211499g00006 427 ProSitePatterns Serine/Threonine protein kinases active-site signature. 217 229 IPR008271 GO:0004672|GO:0006468
Stsc211499g00006 427 ProSitePatterns Protein kinases ATP-binding region signature. 100 123 IPR017441 GO:0005524
Stsc211499g00006 427 MobiDBLite consensus disorder prediction 42 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211499g00006 Stsc-Chr211499 59023 63540 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211499g00006 1 419 Glycoside Hydrolase AT3G07070 66.826 0.0 540
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Stsc211499g00006 Pkinase 7.4e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211499g00006 - - gmx:100786405 621.698