Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211497g00016 ATGGGGTCTCGCTTGGATCAGTATGAGATCATGGAGCAGATCGGTAGAGGAGCATTTGGAGCTGCAATTCTAGTTCATCACAAGACAGAGAAGAAAAAATATGTGTTGAAGAAAATAAGGCTTGCCAGGCAGACTGAAAGGTGCAGAAGAGCTGCTCATCAAGAGATGGTTCTTATTGCTCGAATTCGGCACCCATACATTGTGGAATTCAAGGAGGCTTGGGTTGAGAAGGGTTGTTTTGTCTGCATTGTTACTGGATACTGTGAAGGTGGAGACATGGCTGCATTGATGAAGAAATCAAATGGGGTATACTTTCCGGAGGAGAAACTCTGCAAGTGGTTCGCACAATTACTCTTAGCTGTGGAATATCTGCATTCCAACTATGTATTACATCGTGACTTAAAGTGTTCAAACATTTTTCTAACCAAGGATCAGGATGTTCGCCTAGGGGATTTTGGGCTTGCCAAGACACTAAAAGCAGATGATTTGGCATCTTCGGTGGTAGGAACTCCCAACTACATGTGTCCTGAACTGCTTGCAGATATTCCTTATGGATTCAAATCTGATATTTGGAAAATGCTAATAAAGTGCATGCTGAGAAAAAATCCCGAGCATCGTTTATCAGCATCTGAGATCTTAAAACACCCCTATCTGCAACCTTATGTTCAACAATATCGTCCATCCTTTTGTCCTCCTACAACCTGTTCTCCTCAAAAGTCTATTGGACTTTTCCATGATCCTCGAAAAAATAGGCCTGAAATCCAAAATAATAATAGCTCAAGCAGTGACAGAGATTGTTTGATGTCAAATGGGAGAAACACAGCAATGGCAGTGCCGAATTTTGGTAGAAAAACCACAATTCAGGCATTAGTTGTTGATGATGGCTCTGAGCATCTCCTGCCTAGTGAAGAAGAAAATGGTTCCAGCGATGGCAGTGTTAAAACAGAAGAGGTGGTGAAGCCATCTCATAATGAAAACCATCCTAATATTGTATCTAAGGAACAAAACCTTTTCAAGAATACAATGATTGCTTTAAAAGACAGAAGAGTTAGAGAATCAAGTTCTCCAATGAGAGGCAATCACATAAAGGCTGGCACTGGCAGTGCACCAATCCAAAAAATAAATGCAGAGATACCTTCCAAATTGCCCAAACCTAGTTTTGGTTTGAGGCCTAATTTAGAAGCACCAACTACACCTGCAAAAGCAACCTTTGATTCTGCAAAGGGGTCACATAATTCAAAGTATCAGTTACTGATGACAGAATCATTGCCGAAAACCAGACCTCGAGATAATGTGATTCCGCTATCCGGCCCAACCAAACAAATAGTAGGAAATGTAGTTCCTTCCAAGCCAAGGCAAATGACTCCTCCAAGATTACTCAGACCACCTTCATCTCCAGTTCGAATGAGGCAAGCCAGGCTTGAGTTTCCAAACATAGTGAATGATGTAAGAAACTCAAATCCAGTGGCTCATGAGCCTAAGATAAGCCATCGTAGGTTGAGTAACAGTCACATACCTCGCATTTCGAGAGATATTAGGAAAGAGCCTCGGAAGTCTTCTGAACAGAGTTCGAAAGGAATGCAAACAGACAGCAGCAATTCAGTCTCATCTTCAGTCTCTATTCAAGGATTTGAACTTTGTGATGATGCAACTACTTTTATGGACTTGAGTGAATTCACACTTGCGGATCATGAGAGTATAAACCACATTGAGAATGTGGAATCACATCCAAATAGGCATTCCGAGACATCTGAAAATGTGTCTTGGGAATCCACAAGGCTTCCACAGAGCTTCAGTAATAGAAATACAAGCAATGAGAATGTAAGTTACACTTTATCTCAGGATCACTCAGTTCAAGATCATAAGGGAATTTTCAGGTCCGATGATACCTGTCCCATAAATCAGACAATCATATCTGTTGCCTCAGGGTGTGGTAAGAAATCTTTACAAACCTCAGCTTCAGCTACAAAAGAATCCAAAGAGTTTCAAGACATTTCTATGGAAACTACTACAGCTAAGTTTCCCATTTCTGAAGAGAAGTCTTCTTGTGAAGAGAGCAGACAGGATAATAGGCCTGATAAAGATAGCCAACCTAGTGGTGATGAAGAATTCACGGTCACCAAAAGATTGTCATCAGTGGCTGAAACTGATCCTCTGATAGTCTCTACTAAAATTCCAAGCCATCACATTTTGCAAGAAGAGAAAGGAGCAGTTTTACAGAACCCATCAGCTGAAATTTCATCTGCTGATCAACTTCCTCCAGCTTATGGTGGTGTCATCCATGTTATACGGCATAGTAGTTATCGTGTCGGGAGTGAGCAGCCGGTGAAGGAATCTGTAGAAGTGGGAGTCCAAAATGTTGATGTTGGTAAGTTCATCAGCATTGTAAGGGATGATTCAGAAATGAGAAACGCCAGCACTCCTAAGACCCTTAAATCTTCAAGTTGTTCTGATTATTTAGAATATCCTAATGTTGAATCTCAAAGTTGTCCTGGTACCTTGAGTTTGGAATCAGGTACTCTTGACCAACCTACCATTAAGGATCAGGATTTGAAAATCCCTGATTCCATGGTATCAAAATTTGATTCCACTAAGGAAACTAAGTATGAGACTGCTAAAGTGAAAGATGAAAGAGAGGCAAAGGAAATTTTGGATGTGAAATCTTCAAGGCAGAGAGCTGAGGCACTTGAAGGGCTCTTAGAACTTTCTGCAGACTTGCTGGAGCAGAACAAATTGGAGGAACTCTCAGTTGTTTTGAAGCCATTTGGAAAAGATAAGGTATCCCCAAGGGAGACAGCCATCTGGTTAGCCAAGAGTCTTAAAGGATTGATGATCGAGGATAGTGGTTGA 2850 0.4119 MGSRLDQYEIMEQIGRGAFGAAILVHHKTEKKKYVLKKIRLARQTERCRRAAHQEMVLIARIRHPYIVEFKEAWVEKGCFVCIVTGYCEGGDMAALMKKSNGVYFPEEKLCKWFAQLLLAVEYLHSNYVLHRDLKCSNIFLTKDQDVRLGDFGLAKTLKADDLASSVVGTPNYMCPELLADIPYGFKSDIWKMLIKCMLRKNPEHRLSASEILKHPYLQPYVQQYRPSFCPPTTCSPQKSIGLFHDPRKNRPEIQNNNSSSSDRDCLMSNGRNTAMAVPNFGRKTTIQALVVDDGSEHLLPSEEENGSSDGSVKTEEVVKPSHNENHPNIVSKEQNLFKNTMIALKDRRVRESSSPMRGNHIKAGTGSAPIQKINAEIPSKLPKPSFGLRPNLEAPTTPAKATFDSAKGSHNSKYQLLMTESLPKTRPRDNVIPLSGPTKQIVGNVVPSKPRQMTPPRLLRPPSSPVRMRQARLEFPNIVNDVRNSNPVAHEPKISHRRLSNSHIPRISRDIRKEPRKSSEQSSKGMQTDSSNSVSSSVSIQGFELCDDATTFMDLSEFTLADHESINHIENVESHPNRHSETSENVSWESTRLPQSFSNRNTSNENVSYTLSQDHSVQDHKGIFRSDDTCPINQTIISVASGCGKKSLQTSASATKESKEFQDISMETTTAKFPISEEKSSCEESRQDNRPDKDSQPSGDEEFTVTKRLSSVAETDPLIVSTKIPSHHILQEEKGAVLQNPSAEISSADQLPPAYGGVIHVIRHSSYRVGSEQPVKESVEVGVQNVDVGKFISIVRDDSEMRNASTPKTLKSSSCSDYLEYPNVESQSCPGTLSLESGTLDQPTIKDQDLKIPDSMVSKFDSTKETKYETAKVKDEREAKEILDVKSSRQRAEALEGLLELSADLLEQNKLEELSVVLKPFGKDKVSPRETAIWLAKSLKGLMIEDSG 949
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211497g00016 949 MobiDBLite consensus disorder prediction 426 466 - -
Stsc211497g00016 949 Gene3D Transferase(Phosphotransferase) domain 1 194 240 - -
Stsc211497g00016 949 MobiDBLite consensus disorder prediction 483 536 - -
Stsc211497g00016 949 Pfam Protein kinase domain 8 191 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211497g00016 949 Gene3D Transferase(Phosphotransferase) domain 1 84 193 - -
Stsc211497g00016 949 MobiDBLite consensus disorder prediction 584 606 - -
Stsc211497g00016 949 SUPERFAMILY Protein kinase-like (PK-like) 5 270 IPR011009 -
Stsc211497g00016 949 ProSitePatterns Protein kinases ATP-binding region signature. 14 37 IPR017441 GO:0005524
Stsc211497g00016 949 MobiDBLite consensus disorder prediction 655 705 - -
Stsc211497g00016 949 MobiDBLite consensus disorder prediction 246 265 - -
Stsc211497g00016 949 SMART serkin_6 8 218 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211497g00016 949 MobiDBLite consensus disorder prediction 570 606 - -
Stsc211497g00016 949 MobiDBLite consensus disorder prediction 299 329 - -
Stsc211497g00016 949 ProSiteProfiles Protein kinase domain profile. 8 330 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211497g00016 949 MobiDBLite consensus disorder prediction 655 677 - -
Stsc211497g00016 949 MobiDBLite consensus disorder prediction 491 521 - -
Stsc211497g00016 949 MobiDBLite consensus disorder prediction 678 702 - -
Stsc211497g00016 949 ProSitePatterns Serine/Threonine protein kinases active-site signature. 129 141 IPR008271 GO:0004672|GO:0006468
Stsc211497g00016 949 MobiDBLite consensus disorder prediction 522 536 - -
Stsc211497g00016 949 FunFam Serine/threonine-protein kinase Nek2 5 87 - -
Stsc211497g00016 949 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 7 191 - -
Stsc211497g00016 949 Gene3D Phosphorylase Kinase; domain 1 1 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211497g00016 Stsc-Chr211497 140309 145210 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211497g00016 5 212 MAP Kinase Kinase Gene Family AT4G26070 34.101 9.57e-27 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Stsc211497g00016 Pkinase 3.3e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211497g00016 K08857 - gmx:100818943 1115.91