Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211497g00012 ATGATTTTCCTAAGACAGCTTTGGCTACATGGGAATCAGTTCAATGGGAGAATTCCACATGATATTGGAAACCTCACTTCCTTGCAAGAACTCAACCTCAATAGTAATCAGCTTGTTGGCTTCATTCCTGAGTCTCTAGCAGAAATGGAACTTGAGTTACTGGTGTTGAACAATAACATGTTCATGGGTCCAATACCAGAATTTAAGGCTTCAAATGTTTCTTATGATAACAATTTCTTTTGTCAAATTAAGCCAGGGCATGAATGTGATCCTCAAGTTACTGCACTGCTAGATTTTCTGGATGATATAAACTATCCATTGTTTCTCATATCAGATTGGTCAGGCAATGATCCATGCACTGGACCATGGTTTGGATTGAGCTGCAATTCCAACCACCAGGTAACTAAAATCAACTTGCCGCGGCACGAGCTCAACGGTACTCTTAGTCCCTCACTTGCTAAGTTAGATTCATTACTTGAAATTAGGCTAGAAGGAAATAACATAACTGGCATGGTTCCTAGTAATTTTTCTGAATTGAAATCTTTGAGGTTGTTTGAGTTAAGTGACAACCATCTTGAGCCCCCATTGCCAAAGTTTCAAGATGATGTTAAGGTTGTTGTTGTGGGTAACCCTCTTCTTAGTGAAAGTGGAGGAATGTCTCCACCACCTGAAACTTCACAACCTTCACCAGACAAGCTATCACCCCCTTCATCCTCCTCTCATAATGCACATGATCCTAGTATGAATTCAAGTTCAAGTCAATCTAAACTTGAACATTTCAAAAGATTCAAGACAGTGGCAATTGTGTCTGGAATTGCAGTATTTGTACTTGCTGTTCCTTTGGTGGTTTTTCTCTTCATGTGTTCCAAGAAGAAGAAAAAGGCCTCCTTGGATGCTCCAAGCTCCATTGTGGTGCATCCAAGAGATCCATCTGATAAGGACAATGTGGTTAAAGTCACAGTCTCAGATACCACCACTGGAAGCTTATCAACAAAGACTGGGACAAGTTCTCTGAGTAACATTAGTGGTGAGACTCAAAACTCTCATATAATTGAGGCTGGAAACCTTGTCATTTCGGTTCAAGTCCTACGCAAGGTTACCAACAATTTCTCTTCAGAAAATGAGCTAGGCCGTGGAGGGTTTGGAACTGTGTACAAGGGTGAACTTGAAGATGGGACTAAAATTGCAGTGAAGAGAATGGAGCATGGAGTCCTCAGCAGCAAGGCACTGGAGGAGTTCCAAGCTGAAATCGCTGTTCTTTCGAAGGTTCGGCACAGACATTTGGTATCCCTTTTGGGGTATTCCATTGAAGGCAATGAGAGACTTTTGGTTTATGAATATATGCCTCTTGGTGCTCTTAGCCAACATCTTTTCCATTGGAAAACCTTGAAGTTGAAACCTTTGTCTTTGTCACAAAGGCTTGCAATAGCTCTAGATGTTGCTAGAGGAATTGAATACCTTCATGGTCTTGCCTGCCAGACCTTCATCCATAGAGACCTCAAGTCTTCTAATATTCTACTTGGTGATGATTTACGCGCAAAAGTTTCGGATTTTGGTCTTGTGAAGCTTGCTCCGGATGGCGAAAAATCTGTGGCAACCAAGCTTGCTGGGACATTTGGATACCTTGCTCCTGAATATGCAGTGATGGGGAAGATCACCACTAAAGTTGATGTGTTCAGCTATGGAGTTGTACTGATGGAACTACTGACTGGACTAACAGCACTAGATGAGAGTCGGCCGGAGGAAAGACGGTATCTAGCAGAATGGTTTTGGCGAATCAAATCAAATAAAGAGAAGCTCATGGCTGCCATTGATCCAGCTCTGGAAGCAACTGATGAGACTTTAGAGAGCATATCCATTGTATCTGAACTCGCGGGACACTGCACTGCAAGGGAGGCACACCACCGGCCGGATATGAGTCATGTGGTGAATGTACTGGTGGCATTGGTGGAGAAATGGAGACCAGTTGATGATGAGTTAGATTATGACTCTGGCATTGACTACAGCAGACCACTCCCACAGATGCTGAAGATTTGGAAGGAAGCAGAGAGTGATGAATTTAGCTATGGTGCTAGTACTGAAAACAGTAGGGGAAGTATAGCAGCCAAGCCTTCTGGTTTTGCTGATTCTTTTACTTCTGCTGATGCTAGATGA 2154 0.4276 MIFLRQLWLHGNQFNGRIPHDIGNLTSLQELNLNSNQLVGFIPESLAEMELELLVLNNNMFMGPIPEFKASNVSYDNNFFCQIKPGHECDPQVTALLDFLDDINYPLFLISDWSGNDPCTGPWFGLSCNSNHQVTKINLPRHELNGTLSPSLAKLDSLLEIRLEGNNITGMVPSNFSELKSLRLFELSDNHLEPPLPKFQDDVKVVVVGNPLLSESGGMSPPPETSQPSPDKLSPPSSSSHNAHDPSMNSSSSQSKLEHFKRFKTVAIVSGIAVFVLAVPLVVFLFMCSKKKKKASLDAPSSIVVHPRDPSDKDNVVKVTVSDTTTGSLSTKTGTSSLSNISGETQNSHIIEAGNLVISVQVLRKVTNNFSSENELGRGGFGTVYKGELEDGTKIAVKRMEHGVLSSKALEEFQAEIAVLSKVRHRHLVSLLGYSIEGNERLLVYEYMPLGALSQHLFHWKTLKLKPLSLSQRLAIALDVARGIEYLHGLACQTFIHRDLKSSNILLGDDLRAKVSDFGLVKLAPDGEKSVATKLAGTFGYLAPEYAVMGKITTKVDVFSYGVVLMELLTGLTALDESRPEERRYLAEWFWRIKSNKEKLMAAIDPALEATDETLESISIVSELAGHCTAREAHHRPDMSHVVNVLVALVEKWRPVDDELDYDSGIDYSRPLPQMLKIWKEAESDEFSYGASTENSRGSIAAKPSGFADSFTSADAR 717
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211497g00012 717 FunFam Leucine-rich repeat receptor-like kinase 91 216 - -
Stsc211497g00012 717 Gene3D Ribonuclease Inhibitor 91 216 IPR032675 -
Stsc211497g00012 717 FunFam receptor protein kinase TMK1 332 447 - -
Stsc211497g00012 717 MobiDBLite consensus disorder prediction 213 254 - -
Stsc211497g00012 717 Gene3D Phosphorylase Kinase; domain 1 331 447 - -
Stsc211497g00012 717 MobiDBLite consensus disorder prediction 231 254 - -
Stsc211497g00012 717 SMART serkin_6 370 647 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211497g00012 717 ProSitePatterns Serine/Threonine protein kinases active-site signature. 495 507 IPR008271 GO:0004672|GO:0006468
Stsc211497g00012 717 Gene3D Transferase(Phosphotransferase) domain 1 448 664 - -
Stsc211497g00012 717 Gene3D Ribonuclease Inhibitor 1 90 IPR032675 -
Stsc211497g00012 717 CDD STKc_IRAK 376 646 - -
Stsc211497g00012 717 SUPERFAMILY Protein kinase-like (PK-like) 345 654 IPR011009 -
Stsc211497g00012 717 ProSitePatterns Protein kinases ATP-binding region signature. 376 398 IPR017441 GO:0005524
Stsc211497g00012 717 Pfam Protein tyrosine and serine/threonine kinase 373 646 IPR001245 GO:0004672|GO:0006468
Stsc211497g00012 717 MobiDBLite consensus disorder prediction 690 717 - -
Stsc211497g00012 717 Pfam Leucine rich repeat N-terminal domain 90 129 IPR013210 -
Stsc211497g00012 717 SUPERFAMILY L domain-like 3 196 - -
Stsc211497g00012 717 PANTHER OSJNBA0070M12.3 PROTEIN 1 717 - -
Stsc211497g00012 717 FunFam receptor protein kinase TMK1 448 665 - -
Stsc211497g00012 717 ProSiteProfiles Protein kinase domain profile. 370 650 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211497g00012 Stsc-Chr211497 124592 127559 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211497g00012 92 669 Receptor kinase-like Gene Family AT1G51860 32.542 5.10e-70 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Stsc211497g00012 PK_Tyr_Ser-Thr 1.1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211497g00012 K00924 - gmx:100785090 1090.87