Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211497g00004 ATGGCAACGTACTTTCATGGAAGCAATTCTGAAATGCAATCTTCATCGCCATCAGCTTCTGCAGAAGGTGCCTTGCACACACTTTACCTTATGAACCCAAACTACCACCACGTGCCCTATTCTGACGCGCCGACGCAAAACATGCTTCTTCTTAATCCTAACCACCAATCTCACGCGCTCAACCTTGCTAACTTACCCCACGCGCCCCCGCCACCACACCAACAAAACCACCATCTACTCATTCATCGACTTCCAACCTCCGATGAGCACTCCCGCTCTTCTCTCTTTGGACACCATGACATCGCCACCGCTTCTGCTCCGGCTTCTTTCCACGGCTTCTCCGGCGCATCTGCGGCTCCGCGCGTGCAGTACAATCTGTGGGGATCTGTGGTGGACCAGCCTCAGCCGTCACCGTCCAGCAGCTCGGGAGGCGCCGACATGGGTTTCCGGCGGCCTAGTCAGCAGGGCTTGTCGCTCAGCCTCTCCTCACAGCAGCAAACAGGTGCCTACAGGTCTCTCTCCGGCGAGGTTGAAGTTGCTGTTGCCGGAGGTGTCGGCAACTCGCCGTCATCACCGTCAAACGGGATCTCGGGCGTGCAGGGTGTTCTGTTGGGATCAAAGTACCTGAAAGCCGCACAGGAGCTTCTCGATGAGGTGGTGAACGTTGGCAATAAGGGAATTTCATCTAAGGAGGACTTGCTCGCAACAGCAGAGAAGATCAAGCCAAATAGGGAATCAAATTCTGGAGTCGGTGAAGGCTCAAGTGGCGGCGGTGGCGGAGGAGGAGCAGGAGAAAACAGTGATGCGGGGAAGCATGTTGCTGAACTGAGCACTGCTCAGAGGCAAGAGCTTCAGATGAAGAAATCCAAGCTTGTAACCATGCTCGATGAGGTAGAACAAAGGTACCGGCAATACCACCACCAAATGCAAGTGGTGATATCGTCGTTTGAGCAAGCCGCGGGGTTCGGGGCGGCGAGGTCGTACACTTCGCTAGCCCTAAAGACAATCTCGNNNNNNNNNNTATCTTCACAGATTAGAGCAACCAGCAAGACACTGGGAGAGGATGATTGCTTAGGAGCCAAGGTAGAAGGTTCCAGGCTTAGGTATGTGGATCACCATCTTCGCCAACAAAGAGCACTTCAGCAACTCGGCATGATTCAGCCCAATGCTTGGAGGCCGCAGAGAGGATTACCTGAACGCGCTGTTTCTATTCTCCGTGCTTGGCTTTTTGAGCATTTCCTTCACCCTTATCCCAAGGACTCTGATAAAGTTATGCTAGCAAAGCAAACTGGACTTACTAGGAGCCAGGTGTCTAACTGGTTCATCAATGCAAGGGTTCGACTATGGAAGCCAATGGTTGAGGAAATGTACATGGAAGAAGTGAAGGAGCAAGAAAACAATAACAACAATGGTTCAGAGAGATCAAAGGAATCAAGCAAGGAGTTACTAGGGTCCGCATCAAATGCTACTAATAATAATGCAGCAGCATCAGATAATAATAATCCAGTTCTTGATCCCATAAAAGTTCTTCATCAATCAAAACAAGAATGCTTCAACAACAACAACTCTCCCACCGCCGGCGACATCTCGGCGAATTCTTCCTTGTCCACCTCTCCCATGGGTGGTGGTGGAGGTGGAGGAGGATCCCTTCAATCCCACACCGGTTTCCATCTTGCAGGTTCTTCCTCTGACATGCAAATTAGGAGCCCAAACAAAGCAAGAAACGCTTCAGAAATTATGCATAACTCCCCAAGTAGTATCCTCTCAATGGACATGGAAATGAAGCATCATCACCAAAACAACATGAATGGGGATCATAGAGAAGCCAATAATAATATCACTGGCTATGGAGCTTTCTCAAATGAAGACATTGGAACCAGGTTCAACAATGTCACTGCTGATCATCATCATCCTCACCATCATCATCAGTTAGGTTCTTCAAGGTTTCAAGGCAGCAATGGTGTGTCTCTCACCCTGGGACTTCCACATAATGAGAACAATCTTCCTATGTCAGCAACTCAACATGGATTCCTGCCACAGAATATGCATGGTTTGGGAAGAAGACTTGAGATTGGAAACAATGGGAATGAGTTTTGTGTGATCAACAATCCAAGCTCTTCTCACCCTGGACCTACCTATGAGAGCATTGACATTCAGAACAGAAAGAGGTTTGCTGCACAATTATTGCATGATTTTGTGGCTTGA 2205 0.4898 MATYFHGSNSEMQSSSPSASAEGALHTLYLMNPNYHHVPYSDAPTQNMLLLNPNHQSHALNLANLPHAPPPPHQQNHHLLIHRLPTSDEHSRSSLFGHHDIATASAPASFHGFSGASAAPRVQYNLWGSVVDQPQPSPSSSSGGADMGFRRPSQQGLSLSLSSQQQTGAYRSLSGEVEVAVAGGVGNSPSSPSNGISGVQGVLLGSKYLKAAQELLDEVVNVGNKGISSKEDLLATAEKIKPNRESNSGVGEGSSGGGGGGGAGENSDAGKHVAELSTAQRQELQMKKSKLVTMLDEVEQRYRQYHHQMQVVISSFEQAAGFGAARSYTSLALKTISXXXXSSQIRATSKTLGEDDCLGAKVEGSRLRYVDHHLRQQRALQQLGMIQPNAWRPQRGLPERAVSILRAWLFEHFLHPYPKDSDKVMLAKQTGLTRSQVSNWFINARVRLWKPMVEEMYMEEVKEQENNNNNGSERSKESSKELLGSASNATNNNAAASDNNNPVLDPIKVLHQSKQECFNNNNSPTAGDISANSSLSTSPMGGGGGGGGSLQSHTGFHLAGSSSDMQIRSPNKARNASEIMHNSPSSILSMDMEMKHHHQNNMNGDHREANNNITGYGAFSNEDIGTRFNNVTADHHHPHHHHQLGSSRFQGSNGVSLTLGLPHNENNLPMSATQHGFLPQNMHGLGRRLEIGNNGNEFCVINNPSSSHPGPTYESIDIQNRKRFAAQLLHDFVA 734
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211497g00004 734 MobiDBLite consensus disorder prediction 513 540 - -
Stsc211497g00004 734 Pfam Homeobox KN domain 408 447 IPR008422 GO:0003677|GO:0006355
Stsc211497g00004 734 Pfam Associated with HOX 202 338 IPR006563 -
Stsc211497g00004 734 Gene3D - 394 473 - -
Stsc211497g00004 734 CDD homeodomain 391 452 IPR001356 GO:0003677
Stsc211497g00004 734 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 126 476 - -
Stsc211497g00004 734 FunFam BEL1-like homeodomain protein 9 394 456 - -
Stsc211497g00004 734 MobiDBLite consensus disorder prediction 460 577 - -
Stsc211497g00004 734 MobiDBLite consensus disorder prediction 129 170 - -
Stsc211497g00004 734 MobiDBLite consensus disorder prediction 598 673 - -
Stsc211497g00004 734 SUPERFAMILY Homeodomain-like 392 458 IPR009057 -
Stsc211497g00004 734 MobiDBLite consensus disorder prediction 554 577 - -
Stsc211497g00004 734 SMART HOX_1 391 455 IPR001356 GO:0003677
Stsc211497g00004 734 MobiDBLite consensus disorder prediction 605 628 - -
Stsc211497g00004 734 SMART prehox3 197 350 IPR006563 -
Stsc211497g00004 734 MobiDBLite consensus disorder prediction 645 673 - -
Stsc211497g00004 734 MobiDBLite consensus disorder prediction 481 500 - -
Stsc211497g00004 734 Coils Coil 281 301 - -
Stsc211497g00004 734 ProSiteProfiles 'Homeobox' domain profile. 388 451 IPR001356 GO:0003677
Stsc211497g00004 734 MobiDBLite consensus disorder prediction 238 278 - -
Stsc211497g00004 734 MobiDBLite consensus disorder prediction 460 480 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211497g00004 Stsc-Chr211497 47960 52072 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211497g00004 1 734 Homeobox Transcription Factor Family AT2G35940 41.327 5.25e-121 376
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Stsc211497g00004 POX 1.6e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211497g00004 - - gmx:100779075 698.353