Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211497g00003 ATGGCGGAAATCGAAGTTCCTCGGTTTTTCCTTTGTCCCATCTCGCTTCAGATAATGAAGGACCCGGTGACAACCGTAACAGGGATAACATACGACAGAGAAAGCATCGAACAATGGCTGCTGGTGCAGAAATCCAAGGATTGCGTCTGTCCCGTTACAAAGCAACCATTGCCAAGGGACTCTAATTTCTTGACCCCAAACCACACCCTTCGGAGGCTCATCCAAGGGTGGTGTTCAGCCAACGAATCCAACGGCGTGGATCGGATTCCCACGCCCAGGCCTCCTCTCGACAAGTCCCAACTTCAGAAACTCCTCAAAGATCTTGATGCTCCCCGCAGCTTTGAAACTTCATTGAAGAAGATCCATGATCTAGCCACTGACAGCGAGAGGAATCGAAACTTCATGGCCGAAGAAGGAGTACCCAAGGCCATGGTACAGTTCATCATTGCAAGGAATTCCAACCAAGGTGAAACCAGATGCCTTGAAGCAGCAGTGAGAATTCTTCGGATACTATGGAGAAGTTCAACATCATCGTCATCGTCGGCAGCCGGCGGCGGCGGCACAAACATGAAGCCCCTGGTGGGTGAAAACTTGGACTTGATCAAATCGTTGACTTGGATTCTTCAACTCCCAATAACGGACAACGACCTAATCAACATGGTAAACGAAGCAATGCAAATTCTAAAGCTGACCATCGAAATCACCGATTCAACACTCTTGGGAAGCTTAACCCACGAGTTCTTCAAACTAATCGTGAGTAGCATCATCAGAATAAACAAATCATCATCAATGTCCCAACAAAACGCAATCAAATCAGCGTTACACGTGCTCATAGAAACATGCCCCTTGGGAAGAAACAGAATCAAGATCGTGGAATCCGGTGCAGTTACCGAACTCATCGAACTCGCCATTGATAAACCAACGGAGAAGAACCTAACGGAGCTTATATTCACGCTCTTGGCGCAGCTGTGTTCGTGTGCGGAAGGGAGGGAGCAGTTCTTGAACCACCCGGCGGGGATCGCGGTAGTTTCGAAGAGGACGCTGAGGGTTTCCGCTGCGACCGATGATCGAGCCCTCCATGTGCTGTGGCTGATTTCAAAGTTTTCAGGTTCGAATGAAGTGGTTCAAGAAATGCTGAGGGTTGGAGCTGTGTCAAAGCTATGCATGGTGATGCAAGCAGATTGTAGTTCTTATTTGAAAGAAAAGGCAAGAGATATTCTTAGATTTCACTCTAAGGCTTGGAATAATTCTCCTTGTATTCAGCTTTATTTGTTAACCAGATATCCAAGATGA 1293 0.4733 MAEIEVPRFFLCPISLQIMKDPVTTVTGITYDRESIEQWLLVQKSKDCVCPVTKQPLPRDSNFLTPNHTLRRLIQGWCSANESNGVDRIPTPRPPLDKSQLQKLLKDLDAPRSFETSLKKIHDLATDSERNRNFMAEEGVPKAMVQFIIARNSNQGETRCLEAAVRILRILWRSSTSSSSSAAGGGGTNMKPLVGENLDLIKSLTWILQLPITDNDLINMVNEAMQILKLTIEITDSTLLGSLTHEFFKLIVSSIIRINKSSSMSQQNAIKSALHVLIETCPLGRNRIKIVESGAVTELIELAIDKPTEKNLTELIFTLLAQLCSCAEGREQFLNHPAGIAVVSKRTLRVSAATDDRALHVLWLISKFSGSNEVVQEMLRVGAVSKLCMVMQADCSSYLKEKARDILRFHSKAWNNSPCIQLYLLTRYPR 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211497g00003 430 Gene3D - 99 409 IPR011989 -
Stsc211497g00003 430 ProSiteProfiles U-box domain profile. 5 84 IPR003613 GO:0004842|GO:0016567
Stsc211497g00003 430 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 88 IPR013083 -
Stsc211497g00003 430 PANTHER WDSAM1 PROTEIN 3 421 IPR045185 GO:0061630
Stsc211497g00003 430 CDD RING-Ubox_PUB 7 60 IPR045210 -
Stsc211497g00003 430 SMART Ubox_2 9 77 IPR003613 GO:0004842|GO:0016567
Stsc211497g00003 430 Pfam U-box domain 6 82 IPR003613 GO:0004842|GO:0016567
Stsc211497g00003 430 SUPERFAMILY ARM repeat 102 416 IPR016024 -
Stsc211497g00003 430 SUPERFAMILY RING/U-box 4 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211497g00003 Stsc-Chr211497 34626 36553 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211497g00003 3 427 U-box Gene Family AT3G11840 41.342 1.02e-101 308
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211497g00003 - - adu:107461999 664.84