Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211497g00002 ATGAATCTGCCGCCAGGGTACACTCCGGGGGCCTCCCTTGTTCTGGAAGTGGACTCCTTCTTGCGCATCCGTGAAATACTGAACGATGAGTTGGGCTTTTATCTCCACCAAGCATGTCTCTGCATGAAGAAGCAAGCTGACAAGCACAGGCGGGATAAGGAGTTCAAAGTTGGTGACTTGGTTGGAATTGATGGAGAAAAGCTAGATCAAAGGTGTCCTAATCTGCATTTGGATTCCGGAGGCTCCATAGTTGAAACCATATCAACGCACGGCCAAAAAAAGCAAGGGAAACCTCCGCCAATCTCTGCGCCTCCGGGAGTTCATCTTCCGCCATGGAAGACTCTCAATGAAAGCACCAAGGGAGTGTTGCCGTCGATGGAGCTGCATCTCCAGATTGAGTCACCAAGTATGAACCCGGTTGAAGCGCATGTTGTAGATGAAGCAATTGCAGTGCGTGTTGTGGACAAAGCAACAATGTCGCTTCCAACGGCAACCAATAACAATCTCGTCAAAGTGGAGGAAGTTGGCATCGACATCAACAACATCAACAGCAAATTGAAGGCTCAAGCGGAAAGGACATTTTCCCATGCTACTGAGACAACTATTGAGATAGATGCTTTATTCCAAGGTATTGAATTTCAATTTTATATAATTCATGTGAAGGTTGAAGAACTTAACAGAGACTGGATTGAGAAGTGCAAAGAGATAATTCATAAGTGTATTAATGATGCTAAGATGGATAAAAGGGAGATACAAGATGTAGTTAATGTTGATAAAACTGTTGTTTATGGTGCTGCAATTCAAGCTACTTTGCCTGGTGAAAATTATAGCATTGTTCCTAACATGGTACTAGTTAAGGTCATCACACTGTCTCTTGATGTAGCCATTCATGGAGATTTAATGGGGATAGTGATTTCAAAGAACAATGTCATTCATGGGACTAATTTGCTGGGTTTGTTTTTACTTGAAAGGCTTTCTCTTGTTCCTCAAGGCCATTCTAGCAATGATAGCTTTGAATTTGATTTTGATGGTATCTTAATTGGCATTGAAGAAACCAAAAATGTTGATTGGTTCATTATCTTTACTGCTGAGCTCCATTCAATTGCATGCAAGTGGGAGAAGACAAGTGGTTATTTGGAAAGGAGGATTTTTTCACAACTTTTTACTATTATGGATGAATTGAAGTGTAATAATGCTCATGTTATTATTACTGGTACAACAAAGCGTCCAAATAGCATTACCCCAACACTGAGAAGGTTTGACATATTTGATAAAGAAATTGACCTTGGTGATGTTAAGGAAGCTGATCAACTTGTGGCAAGAATCATGAATTCATTTCACAGAAAAGTCAGAGGCTCTGCTATGGTATTGCAGTTCAAGCAATGGGACCCTGAAGACATGTCTTATGTATTATAG 1416 0.4089 MNLPPGYTPGASLVLEVDSFLRIREILNDELGFYLHQACLCMKKQADKHRRDKEFKVGDLVGIDGEKLDQRCPNLHLDSGGSIVETISTHGQKKQGKPPPISAPPGVHLPPWKTLNESTKGVLPSMELHLQIESPSMNPVEAHVVDEAIAVRVVDKATMSLPTATNNNLVKVEEVGIDINNINSKLKAQAERTFSHATETTIEIDALFQGIEFQFYIIHVKVEELNRDWIEKCKEIIHKCINDAKMDKREIQDVVNVDKTVVYGAAIQATLPGENYSIVPNMVLVKVITLSLDVAIHGDLMGIVISKNNVIHGTNLLGLFLLERLSLVPQGHSSNDSFEFDFDGILIGIEETKNVDWFIIFTAELHSIACKWEKTSGYLERRIFSQLFTIMDELKCNNAHVIITGTTKRPNSITPTLRRFDIFDKEIDLGDVKEADQLVARIMNSFHRKVRGSAMVLQFKQWDPEDMSYVL 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211497g00002 471 Gene3D Actin; Chain A, domain 4 185 232 - -
Stsc211497g00002 471 Pfam ATPase family associated with various cellular activities (AAA) 357 429 IPR003959 GO:0005524|GO:0016887
Stsc211497g00002 471 Gene3D - 233 256 - -
Stsc211497g00002 471 Gene3D - 348 450 IPR027417 -
Stsc211497g00002 471 SUPERFAMILY Actin-like ATPase domain 189 270 IPR043129 -
Stsc211497g00002 471 PANTHER HEAT SHOCK PROTEIN 70KDA 188 312 IPR013126 GO:0005524|GO:0140662
Stsc211497g00002 471 Pfam Hsp70 protein 183 255 IPR013126 GO:0005524|GO:0140662
Stsc211497g00002 471 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 347 440 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211497g00002 Stsc-Chr211497 31001 32928 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211497g00002 189 346 Calmodulin-binding Proteins AT3G12580 32.569 4.82e-23 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211497g00002 K03283 - aip:107637015 107.071