Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211497g00001 ATGGATAACGAAATGGAGGAGGTTCCTGCACATTTTCTGTGCCCAATATCCCTTCAACTGATGAGAGACCCTGTCACCGTTTGCACTGGAATCACCTACGACAGAGACAACATAGAGAAATGGTTATTCACATGCAAAAGCCACACATGCCCCGTTACCAAACAGTCCTTAATTATTCAACACACCGATCTTCATCTTCATCATCATGATCTTATTCTTACACCAAACCACACCCTACGAAGGCTCATTCAATCATGGTGCACCCTAAACCCCTCTCTTGGAACTCCCAAACCCTCCATGGATGCATCTCACATCGCCAAACTAATCTCCCAAGCCAAGCGCTCCCCGGAGACTAAGCACAACTGCCTCGCAACACTCAGATCCATCGCATTCTTCGACAGGAGTAACAAGTCCTGCTTCGATTCTGCAGGTGCAATTGAATTCTTAGCTGTAACCATGATAATGAAGAAGAACAATAATAGCAGCACCGAAGAAGAAGAAGAACAAGATCTCGCTGAAACTGCTATTGAGATCTTGTTTCATCTTGACCTCTCGGAGAATCAGATCAAGAAACTCATCAACAACGAAAGCCTTCGGTTTCTCGAATCGCTGCTGGAAGCCTTGAAGCATGGACGGAGCTGCCAATCAAGAGCGTACGCAACACTGCTGCTGAAATCGGCATTTTCAGTTTCAAATCCGATCCAGTTGATCAACGTGAAAACCGAACTATTCATCGAGATCGCGAGAGTGATACGCGATCGCATATCGCAGCAGGCTCATAAGGCAGCATTGAAGATTATAGTTGAGCTCTGTCCATGGGGAAGAAACAGAATCAAGGCGGTGGAAGCCGGCGTGGTTTCCGTGCTCGTAGAAGTCCTTCTTGATTCGACGGAAAGAAGAACGTGTGAGCTGGCGTTAATGGCGTTGGATCAGCTTTGCGGCTGCGCGGAAGGGCGCGCGGAGTTGGTGAAGCACGGCGCGGGGATCGCCGTGGTGTCGAAGAAAATCTTGAGAGTTTCACGCGCGGCGAGTGAGAGAGGAGTGAGGATATTAGCGTCAATTTGTAGGTACTGTGGGAGTGGGAGAGTGGTTCAAGAGATGCTGCAGGTTGGTGCCGTTAACAAGCTCTGTTTGGTTCTTCAAGTTGATAGTGGTTTGAAGAGTAAGGAGAGGGCTAAAGAGATTCTTAAGTTGCATTCTAATGTTTGGAAGAATTCACCGTGTATTCCTCTACCTTTGTTATCATCATATCCATGA 1257 0.4733 MDNEMEEVPAHFLCPISLQLMRDPVTVCTGITYDRDNIEKWLFTCKSHTCPVTKQSLIIQHTDLHLHHHDLILTPNHTLRRLIQSWCTLNPSLGTPKPSMDASHIAKLISQAKRSPETKHNCLATLRSIAFFDRSNKSCFDSAGAIEFLAVTMIMKKNNNSSTEEEEEQDLAETAIEILFHLDLSENQIKKLINNESLRFLESLLEALKHGRSCQSRAYATLLLKSAFSVSNPIQLINVKTELFIEIARVIRDRISQQAHKAALKIIVELCPWGRNRIKAVEAGVVSVLVEVLLDSTERRTCELALMALDQLCGCAEGRAELVKHGAGIAVVSKKILRVSRAASERGVRILASICRYCGSGRVVQEMLQVGAVNKLCLVLQVDSGLKSKERAKEILKLHSNVWKNSPCIPLPLLSSYP 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211497g00001 418 ProSiteProfiles U-box domain profile. 7 93 IPR003613 GO:0004842|GO:0016567
Stsc211497g00001 418 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 97 IPR013083 -
Stsc211497g00001 418 Pfam U-box domain 8 87 IPR003613 GO:0004842|GO:0016567
Stsc211497g00001 418 SUPERFAMILY RING/U-box 3 91 - -
Stsc211497g00001 418 SUPERFAMILY ARM repeat 105 384 IPR016024 -
Stsc211497g00001 418 CDD RING-Ubox_PUB 9 57 IPR045210 -
Stsc211497g00001 418 PANTHER WDSAM1 PROTEIN 5 410 IPR045185 GO:0061630
Stsc211497g00001 418 ProSiteProfiles Leucine-rich repeat profile. 178 199 IPR001611 GO:0005515
Stsc211497g00001 418 SMART Ubox_2 11 86 IPR003613 GO:0004842|GO:0016567
Stsc211497g00001 418 Gene3D - 101 407 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211497g00001 Stsc-Chr211497 16691 18059 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211497g00001 1 418 U-box Gene Family AT2G35930 50.585 4.06e-142 410
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211497g00001 - - gmx:100778012 530.406