Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211496g00016 ATGTCTTCTACACTTGAGGAATCTCTAAGATCTCTATCGTTGGATTACCTCAACCTCCTAATCAACGGTCAGGCCTTCAGTGACGTCACCTTCAGCGTCGAAGGCCGTCTAGTACACGCGCACCGCTGTATCCTGGCGGCCAGAAGTCTATTCTTCAGGAAATTTTTCTGCGGGCCCGACCCTCCCTCGCCCTCTAGCCTAGACCCTCCAGGCCAGAGGATGAACTCGGGGTCGGGCTGCAGAACCCCTACGGGGGTTATACCCGTGAACTCTGTGGGGTACGAGGTGTTCCTGCTCATGCTGCAGTTCTTGTACAGCGGGCAGGTATCCATCGTCCCCCAGAAGCACGAGCCACGGCCCAATTGCGGCGAGAGAGGTTGCTGGCACACGCATTGCTCCTCCGCCGTGGATCTCGCCCTTGACACACTCGCCGCCGCTAGATACTTCGGTGTTGAACAGCTTGCATTGCTAACTCAGAAACAACTAGCGAGCATGGTGGAGAAAGCTTCCATTGAAGATGTCATGAAAGTGTTGGTAGCTTCAAGAAAGCAAGACATGCACCAACTATGGACAACATGTTCCCACCTAGTAGCCAAGTCCGGCCTCCCACCGGAGGTTCTCGCCAAGCACCTCCCCATCGACATCGTCGCAAAAATCGAAGACCTCCGCCTCAAATCCTCCATCGCCCGCCGTACCGCCGCCTTCCTCCCCCACCACCACCACCCGGACCTTTCGGCCGCAGCAGACCTCGAGGACCAAAAGATCCGCCGGATGAGACGAGCCCTCGACTCATCCGACGTGGAGCTTGTGAAGCTAATGGTAATGGGAGAAGGGCTCAATCTCGACGACGCGCTGGCTCTGCACTACGCGGTCGAGAATTGTAGCCGAGAAGTGGTGAAAGCCCTGCTGGAACTCGGGGCAGCTGACGTCAACTACCCCGCGGGTCCAGCAGGGAAAACACCACTACATATCGCGGCGGAAATGGTTTCGCCCGATATGGTGGCGGTCCTGCTGGACCACCACGCTGACCCAAACGTCAGAACCGTTGACAATGTGACACCATTGGACACACTCAGAACCCTAACCTCTGATTTTCTGTTCAAAGGCGCAGTCCCTGGCTTAACTCACATTGAACCAAACAAGCTAAGGCTGTGTTTGGAGCTTGTTCAATCCGCTGCACTTGTTTTGTCTCGTGAAGAAGGTAACGCCATTAATAACAACAACAATAACAATGTTGCTTCTACAACGCAACACCATCATGTTTATCCTCCTTCCATGAACGAAGATCATCATAGCAGTTCAAGCAGTGGCGGCAACAACAACAATAACAATAACAGCAACATTAACTTGGATTCCAGGTTGGTGTATCTTAACCTTGGTGCCACACTCGGTGCTGGTGGTGGATCCGCTCAAATGAGTGATGATGATAACCGCCATGGGGATGCAGCAATGTACCATCACCATCACCACCACCATCACCATTCTCATCATAATAACTTCTAG 1503 0.5336 MSSTLEESLRSLSLDYLNLLINGQAFSDVTFSVEGRLVHAHRCILAARSLFFRKFFCGPDPPSPSSLDPPGQRMNSGSGCRTPTGVIPVNSVGYEVFLLMLQFLYSGQVSIVPQKHEPRPNCGERGCWHTHCSSAVDLALDTLAAARYFGVEQLALLTQKQLASMVEKASIEDVMKVLVASRKQDMHQLWTTCSHLVAKSGLPPEVLAKHLPIDIVAKIEDLRLKSSIARRTAAFLPHHHHPDLSAAADLEDQKIRRMRRALDSSDVELVKLMVMGEGLNLDDALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDNVTPLDTLRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAALVLSREEGNAINNNNNNNVASTTQHHHVYPPSMNEDHHSSSSSGGNNNNNNNSNINLDSRLVYLNLGATLGAGGGSAQMSDDDNRHGDAAMYHHHHHHHHHSHHNNF 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211496g00016 500 Pfam Domain of unknown function (DUF3420) 201 259 IPR024228 -
Stsc211496g00016 500 ProSiteProfiles BTB domain profile. 27 113 IPR000210 GO:0005515
Stsc211496g00016 500 FunFam regulatory protein NPR5 isoform X2 248 365 - -
Stsc211496g00016 500 CDD BTB_POZ_NPR_plant 10 166 - -
Stsc211496g00016 500 MobiDBLite consensus disorder prediction 484 500 - -
Stsc211496g00016 500 Pfam BTB/POZ domain 18 116 IPR000210 GO:0005515
Stsc211496g00016 500 SUPERFAMILY POZ domain 10 164 IPR011333 -
Stsc211496g00016 500 PANTHER BTB/POZ DOMAIN AND ANKYRIN REPEAT-CONTAINING PROTEIN NH5.2 4 491 IPR044284 GO:0099402
Stsc211496g00016 500 SUPERFAMILY Ankyrin repeat 276 359 IPR036770 -
Stsc211496g00016 500 ProSiteProfiles Ankyrin repeat region circular profile. 317 347 - -
Stsc211496g00016 500 MobiDBLite consensus disorder prediction 466 500 - -
Stsc211496g00016 500 SMART ANK_2a 282 312 IPR002110 GO:0005515
Stsc211496g00016 500 SMART ANK_2a 317 346 IPR002110 GO:0005515
Stsc211496g00016 500 Pfam Ankyrin repeats (3 copies) 265 347 IPR002110 GO:0005515
Stsc211496g00016 500 SMART BTB_4 27 166 IPR000210 GO:0005515
Stsc211496g00016 500 FunFam regulatory protein NPR5 isoform X1 6 199 - -
Stsc211496g00016 500 Gene3D - 248 365 IPR036770 -
Stsc211496g00016 500 ProSiteProfiles Ankyrin repeat profile. 317 349 IPR002110 GO:0005515
Stsc211496g00016 500 Gene3D Potassium Channel Kv1.1; Chain A 2 199 IPR011333 -
Stsc211496g00016 500 MobiDBLite consensus disorder prediction 403 447 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211496g00016 Stsc-Chr211496 90690 93792 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Stsc211496g00016 BTB 2.7e-14 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211496g00016 K14508 - qsu:112012060 721.85