Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211496g00006 ATGGGGATGGCTGCTGCAGAGTCACAACAGTTTCATGTGTTGGCTGTTGATGACAGCCTCATAGATAGGAAGCTTATTGAGAGGCTCCTCAGAACCTCTTCTTACCAAGTTACTACAGTTGATTCCGGGACCAAAGCTTTAGAATTTCTGGGCTTGCGTGAGAATGATGATGGCACCCCAAATACACCATCTGTTTCTCCTAACAATCATCAGGAGGTGGAGGTGAATATGGTTATAACAGATTACTGTATGCCTGGGATGACTGGCTATGATTTGCTCAAGAAAATCAAGGAATCTTCATCTCTTAGAAACATACCAGTGGTGATTATGTCATCTGAGAATGTGCCTTCAAGAATTAGCAGATGCTTGGAGGAAGGAGCTGAAGAGTTTTTCTTGAAGCCAGTAAGGCTTTCAGATTTGAATAGGCTCAAACCACATATAATGAAGATGAGCAAGTTGAAAGATCAAGATCAAAATCAAAAGCAAGTGATACCAGAAAAGATTGAGAACTTGTTAGAAGTTCAAAAGCAGCATCAACCACCACCACAACAACAACAACCACCCCAAATCCAAAATGAGTATCCACAACCACAAGAAGAAGCACAAGTGCAACCAACATTAGAGCAACAGCAACAATCACTACAACAAAACAACAACAACAACAATAGCAACAGCAACAAGAGGAAGAGCATGGATCAGAGCCTTTCACCAGAACCTACTGACAGAACTAGACCAAGATACAGTGGCATAGCCACTGTGGTATGA 765 0.4183 MGMAAAESQQFHVLAVDDSLIDRKLIERLLRTSSYQVTTVDSGTKALEFLGLRENDDGTPNTPSVSPNNHQEVEVNMVITDYCMPGMTGYDLLKKIKESSSLRNIPVVIMSSENVPSRISRCLEEGAEEFFLKPVRLSDLNRLKPHIMKMSKLKDQDQNQKQVIPEKIENLLEVQKQHQPPPQQQQPPQIQNEYPQPQEEAQVQPTLEQQQQSLQQNNNNNNSNSNKRKSMDQSLSPEPTDRTRPRYSGIATVV 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211496g00006 254 SUPERFAMILY CheY-like 10 171 IPR011006 -
Stsc211496g00006 254 CDD REC_typeA_ARR 13 143 - -
Stsc211496g00006 254 SMART REC_2 11 147 IPR001789 GO:0000160
Stsc211496g00006 254 PANTHER TWO-COMPONENT RESPONSE REGULATOR 11 221 IPR045279 GO:0009736
Stsc211496g00006 254 MobiDBLite consensus disorder prediction 189 241 - -
Stsc211496g00006 254 Gene3D - 12 236 - -
Stsc211496g00006 254 MobiDBLite consensus disorder prediction 175 254 - -
Stsc211496g00006 254 ProSiteProfiles Response regulatory domain profile. 12 148 IPR001789 GO:0000160
Stsc211496g00006 254 Pfam Response regulator receiver domain 13 140 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211496g00006 Stsc-Chr211496 32975 35104 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211496g00006 1 254 Response Regulator Gene Family AT3G57040 58.915 5.04e-94 274
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Stsc211496g00006 Response_reg 2.2e-19 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211496g00006 K14492 - gmx:100788079 313.153