Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211496g00001 ATGATGCTTGCAATATCCTCTCCAACTATGTTCCCTAATAACATGGAAATGGAATGGCCCTTACACTTAGAAGAAGAAGTAAGTCACTTCAACACACAAGACTTTCCAATACTCCATCAACAACTCTCTTCTTCTTCTTCCATGGCCAAGAAACTTAATCACAATGCAAGCGAGCGCCACCGCCGCAAGAGGATCAATGCCTTGTACTCTTCTCTCCGTTCACTCCTCCCTCTTTCAGATCAAATGAAGAAGATGAGCATCCCAGCAACAATTTCAAGAGTGTTGAAATACATACCTGAGTTGCAACAACAGGTGGAAGACCTCATCAAGAAAAAGGAGGACCTCTTGCTGAGAATTTCTCAGCAAGGGGCAGCGGTGAACAACAAGAAAGAATCTGTAAAGAAAGGGAAAGGTGATTTTCTGGTTTCATCAAGTAGGCTCAGTCAAAGTGAAGTTAGTATTCAGATTATTTCTTCTCCCTATGATGGGATTCATAAGTGTCCATTATCTGAAATCTTGGTGTGTTTGGAAAATCAATATGGCCTTGAACTGCTAAATGCTTCTTCCTTTGACACCCTTGGAGGAAGGCTCTTCTATAACTTGGTGTTTCAGATGGAAAAGAGTGGTGCATTAGACTCAGAAATTGTAAGGGACAAGATCTTGTCAATATGTGACAAGCATCAAAGGATTATGAAAGATCAAATTAAGTATCTTGGCTTCTCTGATACACAATTATGTAATAATGCCTAG 750 0.4027 MMLAISSPTMFPNNMEMEWPLHLEEEVSHFNTQDFPILHQQLSSSSSMAKKLNHNASERHRRKRINALYSSLRSLLPLSDQMKKMSIPATISRVLKYIPELQQQVEDLIKKKEDLLLRISQQGAAVNNKKESVKKGKGDFLVSSSRLSQSEVSIQIISSPYDGIHKCPLSEILVCLENQYGLELLNASSFDTLGGRLFYNLVFQMEKSGALDSEIVRDKILSICDKHQRIMKDQIKYLGFSDTQLCNNA 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211496g00001 249 Pfam Helix-loop-helix DNA-binding domain 50 102 IPR011598 GO:0046983
Stsc211496g00001 249 SMART finulus 55 107 IPR011598 GO:0046983
Stsc211496g00001 249 FunFam Transcription factor ORG2 45 130 - -
Stsc211496g00001 249 Coils Coil 98 118 - -
Stsc211496g00001 249 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 49 101 IPR011598 GO:0046983
Stsc211496g00001 249 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 46 219 - -
Stsc211496g00001 249 Gene3D - 40 134 IPR036638 GO:0046983
Stsc211496g00001 249 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 49 122 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211496g00001 Stsc-Chr211496 5406 6394 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211496g00001 48 206 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G56970 50.617 6.35e-40 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc211496g00001 HLH 2.7e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211496g00001 - - adu:107492670 276.174