Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211495g00014 ATGGGCAAAAAGAAACCAAAGGACCCTCCCCAAACCGACTTAACTTCGCCCCCTCCCGCTGCCGGCATTTTCTCCTCGCTCTTCGCCGCCGCGCCGGAAGCAAACACCCCCCTCGCTTCCTTATTCTCCGACGACAACCCCTTTCGGAGAAAGCCCGCTCAAGCTTCTCAGGAATCAACCCAACAAGCTCAAATCCCTGGCAATGTCGGATCCGCGAACCACGACACCGGCGAGGAGCAGAAGAGGAAGAGGAAAATCTTAGAGGAGAAGCCCTCCGCCGATTCCCCAATCGAAGCTTCGGAGAAGAAGGGGAAGTACCACGAGTCAATTGAAGAGGCCAAAGGCTCTGACTTGGCAATCGAAAAGAACGATGAGGGGAAGGACAAGAAGAAGAAGAAGAGGAAAAGAGAGGAGCTTGAGAAGCAGTGGGAGGAGAGGAAGTATGGTGCGGTGGTGGAGGAAGAAAAAGAAGCGCCTTTGTTGGAGAACGGAAAAGTTGGCGGCAAGAGGAAGTTGCTGCATAACCCTGCTGATATGATGGTATCGAAGGAAGGGTTTGATGATGAGGACAAGCTCTTGAGAACGGTCTTCGTTGGGAATTTGCCTCTCAAGGTGAAGAAGAAGACCCTGCTCAAAGAGTTCAAGAAGTTCGGTGAGGTTGAGTCCGTGAGGATTCGTTCTGTTCCGATACAAGATACTAAAAAGCCTAGGAAGGGTGCTATCCTTGCGAAGAAAATCAATGATGCTGCTGAAAGTGTTCATGCCTACATTGTTTTCAAAACTGAAGAATCTGCTCAGGCATCTTTGTCCCACAACATGGCAGTGGTTGAAGGGAATCACATTCGTGTTGATAGGGCATGTCCACCCCGCAAGAAACTTAAAGGGGAGAGTACTCCACTTTATGATAACAAGAGAACTTTGTTTGTGGGCAACCTTCCATTTGATGTGAAGGATGAAGAACTATATCAGTTATTTTGTAGCATACCTAACCTGGGTACCAGTGTAGAAGCTGTAAGAGTTGTTAGAGATCCTCATCTTAATGTTGGAAAGGGTATTGCCTATGTGCTGTTTAAAACAAAGGAAGCTGCTAATTCTGTACTCAAGAAACGGAACTTGAAGCTTCGAGACCGAGAATTACGACTCAGTCATGCCAAAGCTGATTCCACCCCATCGAAAAGGCCAAACCCATCACCAGCACAAGCTCCTGGCACCCCAGCCAAGAGAAACCGTCTGGCTACATCGTCTCCTTCAAGCAGCATCAACAGGTCAAACAAAAAATCCAATGCATCCTACCAGGGTCTGCGTGCAACAAAGTCTGACTTCAAGAAGAAAGCTCCTGGAGTAGAAAAACCAAAACAACGCTTGGAGAAAAGACCATCAGTTGCCGCCAGAAAGGCCAAAGCAAATATGCTCAAGCAAAGCGGTTCATCAAAACAAACTGGGATGAAACGCAAGCTTGATAGTCGTACTCCAGATAGCTCCTTCAGAGCTAAGAAGGTGAAGAAGAATAGGTAG 1515 0.4785 MGKKKPKDPPQTDLTSPPPAAGIFSSLFAAAPEANTPLASLFSDDNPFRRKPAQASQESTQQAQIPGNVGSANHDTGEEQKRKRKILEEKPSADSPIEASEKKGKYHESIEEAKGSDLAIEKNDEGKDKKKKKRKREELEKQWEERKYGAVVEEEKEAPLLENGKVGGKRKLLHNPADMMVSKEGFDDEDKLLRTVFVGNLPLKVKKKTLLKEFKKFGEVESVRIRSVPIQDTKKPRKGAILAKKINDAAESVHAYIVFKTEESAQASLSHNMAVVEGNHIRVDRACPPRKKLKGESTPLYDNKRTLFVGNLPFDVKDEELYQLFCSIPNLGTSVEAVRVVRDPHLNVGKGIAYVLFKTKEAANSVLKKRNLKLRDRELRLSHAKADSTPSKRPNPSPAQAPGTPAKRNRLATSSPSSSINRSNKKSNASYQGLRATKSDFKKKAPGVEKPKQRLEKRPSVAARKAKANMLKQSGSSKQTGMKRKLDSRTPDSSFRAKKVKKNR 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211495g00014 504 SUPERFAMILY RNA-binding domain, RBD 186 294 IPR035979 GO:0003676
Stsc211495g00014 504 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 194 288 IPR000504 GO:0003723
Stsc211495g00014 504 MobiDBLite consensus disorder prediction 50 74 - -
Stsc211495g00014 504 MobiDBLite consensus disorder prediction 1 22 - -
Stsc211495g00014 504 Gene3D - 190 293 IPR012677 -
Stsc211495g00014 504 SMART rrm1_1 306 382 IPR000504 GO:0003723
Stsc211495g00014 504 SMART rrm1_1 195 284 IPR000504 GO:0003723
Stsc211495g00014 504 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 305 386 IPR000504 GO:0003723
Stsc211495g00014 504 MobiDBLite consensus disorder prediction 407 435 - -
Stsc211495g00014 504 SUPERFAMILY RNA-binding domain, RBD 301 403 IPR035979 GO:0003676
Stsc211495g00014 504 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 285 462 - -
Stsc211495g00014 504 MobiDBLite consensus disorder prediction 437 463 - -
Stsc211495g00014 504 MobiDBLite consensus disorder prediction 38 140 - -
Stsc211495g00014 504 CDD RRM1_RBM34 194 284 - -
Stsc211495g00014 504 MobiDBLite consensus disorder prediction 482 498 - -
Stsc211495g00014 504 Coils Coil 122 142 - -
Stsc211495g00014 504 CDD RRM2_RBM34 306 382 IPR034221 -
Stsc211495g00014 504 MobiDBLite consensus disorder prediction 75 140 - -
Stsc211495g00014 504 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 196 238 IPR000504 GO:0003723
Stsc211495g00014 504 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 307 379 IPR000504 GO:0003723
Stsc211495g00014 504 MobiDBLite consensus disorder prediction 382 504 - -
Stsc211495g00014 504 Gene3D - 295 393 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211495g00014 Stsc-Chr211495 124704 128082 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211495g00014 196 385 Eukaryotic Initiation Factors Gene Family AT1G22760 26.263 1.31e-07 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211495g00014 K14837 - gmx:100784494 612.453