Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211495g00010 ATGGATTACACCCGAGACGGCGACGTCGTCCAAATTATCGCCGGCGCCGCTAACGACCCTTCCGTCTGGGCTACTGAAGAGGACTACAAATTCTGGAACAACGACGCTGACACCACACCTTCCAATTCCGGCGGAGGAGGAACCGCTTACGACCAGAGGAAGAAGCCAAGAAGCTCTCAGGACAACAACGCAACCACCTCTTCCAGCAACAACAATAACAACAGAGCCAAGGCCATAGGCAAGATGTTCTTCAAGACCAAGCTATGCTGCAAGTTCCGTGCCGGAACCTGCCCTTACGTCACCAACTGCAACTTCGCTCACTCCGTCGAAGAGCTCCGTCGCCCTCCGCCCAACTGGCAGGAGATCGTTGCCGCTCACGAGGAGGAGAGGGCCAACGCTGGCTCCGACACTGTTGTTCCGCCCAGGGAGGAGTTCCAGATTCCAATTCTGGGCTCTTCGAATTACTCCGGCGAGTCGCAGCGCTCTTACAAGGGAAGGCATTGCAAGAAGTTCTATACAGAAGAAGGGTGTCCCTATGGGGATAGTTGCACCTTTCTTCATGATGAGCAATCCAAATATAGAGAGAGTGTGGCTATAAGCTTGGGCCCTGGTGGCTATGGTGGTGGAGGGGGTGGTGCCGGTGGAGGAGGAGGAGGGGGTGGTGGAGGTGGAGGTGGAGGTGGAGGTGCTGGAAGTGGCGGTGGTGCAGGTGCTGGTGGTGGTGGTGGTGGTGGAGGTGGAAATGGGAATGGGACTAATTCGAAGCCTTCGAATTGGAAGACGAGGATTTGTAACAAATGGGAGATGACAGGGTATTGTCCCTTCGGAAACAAGTGCCATTTTGCTCATGGTGCAGCAGAATTGCATCGGTATGGAGGTGGGCTTGTGGAGGGAGAAAGCAGAGACCCTTCTTCTGCTGCTGCTCCGGACGCAAAGCAGGGAGGCGTACCTTCAAAATCTCCTGCTGATAATGTGGTTGCATCAGTCACCCCGGTTGCTCATTCGGATTCGGTGTATCATATGGGAGTTCCTTCCCAAAGGCCTGCGATTGTGCTTCAGAGGCCAGGACAGAGAGCGCACCAGAAGTGGAAAGGTCCTGATAAAATCAGTAGAATATATGGTGATTGGATTGAGGACATTGAATAG 1146 0.5401 MDYTRDGDVVQIIAGAANDPSVWATEEDYKFWNNDADTTPSNSGGGGTAYDQRKKPRSSQDNNATTSSSNNNNNRAKAIGKMFFKTKLCCKFRAGTCPYVTNCNFAHSVEELRRPPPNWQEIVAAHEEERANAGSDTVVPPREEFQIPILGSSNYSGESQRSYKGRHCKKFYTEEGCPYGDSCTFLHDEQSKYRESVAISLGPGGYGGGGGGAGGGGGGGGGGGGGGGGAGSGGGAGAGGGGGGGGGNGNGTNSKPSNWKTRICNKWEMTGYCPFGNKCHFAHGAAELHRYGGGLVEGESRDPSSAAAPDAKQGGVPSKSPADNVVASVTPVAHSDSVYHMGVPSQRPAIVLQRPGQRAHQKWKGPDKISRIYGDWIEDIE 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211495g00010 381 MobiDBLite consensus disorder prediction 59 74 - -
Stsc211495g00010 381 Pfam CCCH-type zinc finger 166 188 IPR041367 -
Stsc211495g00010 381 SMART c3hfinal6 258 285 IPR000571 GO:0046872
Stsc211495g00010 381 SMART c3hfinal6 83 109 IPR000571 GO:0046872
Stsc211495g00010 381 SMART c3hfinal6 162 189 IPR000571 GO:0046872
Stsc211495g00010 381 Gene3D - 151 200 - -
Stsc211495g00010 381 Gene3D - 80 114 - -
Stsc211495g00010 381 Gene3D - 251 290 - -
Stsc211495g00010 381 MobiDBLite consensus disorder prediction 33 74 - -
Stsc211495g00010 381 FunFam zinc finger CCCH domain-containing protein 15-like 252 291 - -
Stsc211495g00010 381 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 84 108 IPR000571 GO:0046872
Stsc211495g00010 381 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 259 284 IPR000571 GO:0046872
Stsc211495g00010 381 ProSiteProfiles Zinc finger C3H1-type profile. 258 286 IPR000571 GO:0046872
Stsc211495g00010 381 FunFam Zinc finger CCCH domain-containing protein 79 115 - -
Stsc211495g00010 381 MobiDBLite consensus disorder prediction 34 48 - -
Stsc211495g00010 381 ProSiteProfiles Zinc finger C3H1-type profile. 83 110 IPR000571 GO:0046872
Stsc211495g00010 381 SUPERFAMILY CCCH zinc finger 161 190 IPR036855 GO:0046872
Stsc211495g00010 381 ProSiteProfiles Zinc finger C3H1-type profile. 162 190 IPR000571 GO:0046872
Stsc211495g00010 381 PANTHER CCCH ZINC FINGER/TIS11-RELATED 247 304 IPR045877 GO:0003729
Stsc211495g00010 381 SUPERFAMILY CCCH zinc finger 256 289 IPR036855 GO:0046872
Stsc211495g00010 381 MobiDBLite consensus disorder prediction 296 323 - -
Stsc211495g00010 381 FunFam Zinc finger, CCCH-type 156 194 - -
Stsc211495g00010 381 SUPERFAMILY CCCH zinc finger 81 114 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211495g00010 Stsc-Chr211495 96100 99229 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211495g00010 260 288 C3H Transcription Factor Family AT1G68200 62.069 3.18e-07 49.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Stsc211495g00010 zf-CCCH 1.2e-10 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211495g00010 - - adu:107487192 608.601