Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211495g00009 ATGTCGTCTTCTTCTTCTTCCACAACCTCGTCATCAGAATCAGATCACAGAGGAGGAGGAGGAGCAGCAGCAGCAACAGCATACAGCACACCACCAGTACTCATAGCATTCATCCTTGTCCTCCTCGTCATCTGCTTCGTCTGCTTCACCCTCATCTACTTCTGCCGCTGCTACTTCGTCAGCATCATCCACACCCTCGCCTTCCACCGCTCCCCCACCGCAACCGCCACCGCCGCTGCCGCCACCGCTAACTCCATCAACAACGGTCCCGATTCCCCCTTCATGGGCCTCGACGCTGCCCTCCTCGACGAATTCCCCACGTTCCCTTATTCCTCCGTGAAGGAGAAGAAGTACGGCCTGGAATGCGCCATCTGTCTGTTGGAGTTCGAGGACGACAGCCTTCTCCGGTTGCTCACCGTGTGCCGCCACGTGTTCCACCAGGAGTGCGTTGATCTGTGGCTCCATCGCCACAAGACATGCCCCGTTTGCCGCACCGATCTTGAAACCAGAAAGTCTTGTTCTGATGATGATGACATTCACGATCATGAACGGCAGAGTGTTGCTGCTGCTGGAGGAGAAGACGGTAACGGCGATGACGTGTGCATTGAGGTGAAAGAAGGCGATGATGATGAGGATGATGATGATGGTAATAATAGATTCGTTCGGTCGCATTCGACGGGGCATTCAATAGTTATGGTTAGAGAAGAAGGAAGAGATGATGATGATGATGATAGGTATAGGTTGAAGTTGCAGGAGGATGCAGAGTTGAGGAGGATTGTTAACAATGATATGATGAAGAAGAAGAATAATCATCACCAATACTCGAGGAGCTGTGAGAGTTACACGGAGATGATGATGGCGGCGAAGCCTGTTGTTCCTCCTTGTACTAACTGTGGTTATGTTGATCATCAAACTCTCTCCTCTGCTACTTGTTCTTCGCGTCTTGGTGCTGCTAACTGA 960 0.5146 MSSSSSSTTSSSESDHRGGGGAAAATAYSTPPVLIAFILVLLVICFVCFTLIYFCRCYFVSIIHTLAFHRSPTATATAAAATANSINNGPDSPFMGLDAALLDEFPTFPYSSVKEKKYGLECAICLLEFEDDSLLRLLTVCRHVFHQECVDLWLHRHKTCPVCRTDLETRKSCSDDDDIHDHERQSVAAAGGEDGNGDDVCIEVKEGDDDEDDDDGNNRFVRSHSTGHSIVMVREEGRDDDDDDRYRLKLQEDAELRRIVNNDMMKKKNNHHQYSRSCESYTEMMMAAKPVVPPCTNCGYVDHQTLSSATCSSRLGAAN 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211495g00009 319 SMART ring_2 122 163 IPR001841 -
Stsc211495g00009 319 ProSiteProfiles Zinc finger RING-type profile. 122 164 IPR001841 -
Stsc211495g00009 319 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 22 284 - -
Stsc211495g00009 319 FunFam E3 ubiquitin-protein ligase ATL6 88 170 - -
Stsc211495g00009 319 Pfam Ring finger domain 121 164 IPR001841 -
Stsc211495g00009 319 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 98 174 IPR013083 -
Stsc211495g00009 319 SUPERFAMILY RING/U-box 108 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211495g00009 Stsc-Chr211495 94147 95106 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211495g00009 22 231 C3H Transcription Factor Family AT2G35420 31.674 5.01e-32 118
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211495g00009 - - ahf:112747412 433.721