Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211495g00008 ATGGCCTTATTAGAACCTCATCATCATCTTTCATCATCAAATGAGTTTTCCAACTTCGTAGTGTATGATACTATCTCTGCAACCCCTTTTAGCAGTAGCCATGGAAGTTCATCAGGTATGAGCAGTACCAGTTTCTTGGTAGAAGAAAACAAGGTTGAGTATAATGGAGGGAGGACAACAAGAAAACGGCAATCGGGTGAAGCAGCAGAAAGAGGGAATAAGAAGAAGAGGAGGAGAAAGCCAAGGGTATGCAAGAACAAGGAAGAGGCTGAGAATCAAAGAATGATCCACATTACTGTTGAGAGGAACAGAAGGAAGCTCATGAATGAGCACCTTGCTGTTCTCCGCTCACTCATGCCTGAATCCTACGTCCAAAGGGGTGATCAAGCATCAATAGTAGGTGGAGCTATAGAATTTGTGAAGGAGCTGGAGCACATGTTGCAGTGCCTTGAGGCTCAAAAGTTGAAGCTTGTACATCAAGGAATGGCAGCACAACAATCCATCAATAATAATGAAGATGCTACTACTAGTTCCAATAATAATAATAATAATGAGTTGATGATGATGATGATGATGATGATGGGATCAGCCCCTTTTTCCCATTTCTTTGTGCATCCTCAGTTCACTTGGTCTCAGGCTCCAACAAACAAATATGCTTCTTCTTCGCATCAGAATCAGAATCAGAATAATAATAATCAAGGTGCAGCCATGGCTGACATTGAGGTCACTTTGATTGAAACCCATGCAAACCTTAGAATCCTCTCAAGGAAAAGCCCCAGGCAACTTTCAAAGCTGCTTTCTGGTTTTCAAAATCTCTGTCTCACCATTTTGCATCTCAATGTCACCTCCATGGACCCCTTAGTACTCTATTCCATTAGCGCCAAGGTTGAAGAAGGATGCCAACTTGGTTCAGTAGATGACATTGCAAGTGCTGTTCACAACTTGCTTAGAATGATTGAAGAAGAGGATTCCCTTTCCAGTTTATACGGTGAAGTTACCAAATCAACCCCCTCCCCTCTTCAACACTGA 1029 0.4227 MALLEPHHHLSSSNEFSNFVVYDTISATPFSSSHGSSSGMSSTSFLVEENKVEYNGGRTTRKRQSGEAAERGNKKKRRRKPRVCKNKEEAENQRMIHITVERNRRKLMNEHLAVLRSLMPESYVQRGDQASIVGGAIEFVKELEHMLQCLEAQKLKLVHQGMAAQQSINNNEDATTSSNNNNNNELMMMMMMMMGSAPFSHFFVHPQFTWSQAPTNKYASSSHQNQNQNNNNQGAAMADIEVTLIETHANLRILSRKSPRQLSKLLSGFQNLCLTILHLNVTSMDPLVLYSISAKVEEGCQLGSVDDIASAVHNLLRMIEEEDSLSSLYGEVTKSTPSPLQH 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211495g00008 342 MobiDBLite consensus disorder prediction 54 72 - -
Stsc211495g00008 342 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 92 143 IPR011598 GO:0046983
Stsc211495g00008 342 MobiDBLite consensus disorder prediction 52 90 - -
Stsc211495g00008 342 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 91 166 IPR036638 GO:0046983
Stsc211495g00008 342 PANTHER MAX DIMERIZATION, MAD 30 324 - -
Stsc211495g00008 342 SMART finulus 98 149 IPR011598 GO:0046983
Stsc211495g00008 342 Pfam Helix-loop-helix DNA-binding domain 93 144 IPR011598 GO:0046983
Stsc211495g00008 342 Coils Coil 140 160 - -
Stsc211495g00008 342 Gene3D - 84 160 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211495g00008 Stsc-Chr211495 88501 89877 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211495g00008 84 296 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 51.174 5.84e-59 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc211495g00008 HLH 4.1e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211495g00008 - - aip:107642328 484.182