Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211495g00007 ATGGCATCTCTTGGCAACCCAAGAACTTGGGTTCCATATGTGAACAGTAAAGACTGTTCTCAAGGATTTTGCAGCTTGTACTGTCCACAGTGGTGTTATGCAGTGTACCCTCCACCTCCTCCTCCTCCTTTTGAATTCCCTGATGAAGATTCAGGTCCGAATTTCTCACCTCTTGTTATTGCAATCATTGGAGTGTTGGCAAGTGCTTTCCTTCTTGTGAGTTACTACACCATAATTTCCAAGTACTGTGGCAGAAGAGAATCATCCTCAGAAGGACATGAAGAAGAAGCAACAAATGTTGAGATTTTTGAAGATAATCACAATCCTTCACTCCATGAGCCATGGAATGCCTCAACATCTGGCCTAGATGAGGCACTCATCAAGACTATAACTGTTTGCAAGTACAAGAAAGGAGAAGGACTCGTTGAGGTAACGGATTGTTCCGTTTGCCTCAGCGAGTTCCAAGATGGCGAGAGCATTCGGCTCTTGCCAAAGTGTAGCCATGCTTTTCACATTCCTTGCATTGATACATGGCTCAAGTCTCACTCCAATTGCCCTCTTTGCCGCGCCACGCTTTTTACCTTTAATGCTGCAGCTCCATTTCATGCACTGCCGCCGGCACCCCAAGTGTTGGAACTACCTTCATCAAGAAATGAAGGCTCTTCAGAGAATGGGGCTAGTGTAGATGACAATGTGGAGAATGGAAGAAGGGACAGTGATGAGTTATTGGATGTGGTGTTGGAAGAAGGTGCATCGAATGGTAGCAGAGAAGTCCCCAAGACTAATGCATTGCGCGCATTCAGTGACTTGGGGAATTTGAGGGGAAGGCATGTTGAGATTAGAGATGAGGATGACTATGAATCAATAAGAAGATCAGTGTCTATGGATCATTCTTTTCAAAATGGTGTTACACTTTCAGTAGCTGATGTTCTTCACATGAACCATGATCAAGATTCAAATGAAGAAGCTGGCACTTCAAAGAGATCATCATCATCATCATCATCAAGGGGTGAAGGTAGCAAATCAAGCTATAAAAGAAGGGTGTTGCATTGTGTTATGAGTCCAATTTCAATGAAGAGATCATTCTCAAGTGGAAGATTCTCACTTAGTGGCAGAAATGGCAGGGGAAGGCAGGGGATTTTACCTTTATGA 1152 0.4384 MASLGNPRTWVPYVNSKDCSQGFCSLYCPQWCYAVYPPPPPPPFEFPDEDSGPNFSPLVIAIIGVLASAFLLVSYYTIISKYCGRRESSSEGHEEEATNVEIFEDNHNPSLHEPWNASTSGLDEALIKTITVCKYKKGEGLVEVTDCSVCLSEFQDGESIRLLPKCSHAFHIPCIDTWLKSHSNCPLCRATLFTFNAAAPFHALPPAPQVLELPSSRNEGSSENGASVDDNVENGRRDSDELLDVVLEEGASNGSREVPKTNALRAFSDLGNLRGRHVEIRDEDDYESIRRSVSMDHSFQNGVTLSVADVLHMNHDQDSNEEAGTSKRSSSSSSSRGEGSKSSYKRRVLHCVMSPISMKRSFSSGRFSLSGRNGRGRQGILPL 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211495g00007 383 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 122 195 IPR013083 -
Stsc211495g00007 383 SMART ring_2 147 188 IPR001841 -
Stsc211495g00007 383 ProSiteProfiles Zinc finger RING-type profile. 147 189 IPR001841 -
Stsc211495g00007 383 MobiDBLite consensus disorder prediction 210 237 - -
Stsc211495g00007 383 PANTHER RING-H2 FINGER PROTEIN ATL16 43 343 IPR044600 GO:0016567|GO:0016740
Stsc211495g00007 383 MobiDBLite consensus disorder prediction 214 229 - -
Stsc211495g00007 383 FunFam RING-H2 finger protein ATL54 122 195 - -
Stsc211495g00007 383 MobiDBLite consensus disorder prediction 363 383 - -
Stsc211495g00007 383 Pfam Ring finger domain 146 189 IPR001841 -
Stsc211495g00007 383 SUPERFAMILY RING/U-box 146 195 - -
Stsc211495g00007 383 MobiDBLite consensus disorder prediction 316 346 - -
Stsc211495g00007 383 MobiDBLite consensus disorder prediction 324 339 - -
Stsc211495g00007 383 CDD RING-H2_EL5-like 146 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211495g00007 Stsc-Chr211495 81670 83213 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211495g00007 1 342 C3H Transcription Factor Family AT3G03550 40.884 1.78e-71 226
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211495g00007 - - adu:107487194 671.389