Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211495g00006 ATGGCGGCAACATCATTAGACTCAGCACTCTCCATATTGGCATCTCACTCCCACCCTTTCACTCGTCTCTCTCCAAAACCACCTGACTCCATTAAACTCCACACCTCCCTCTCTCCTCTCTCCTTCTCCTCCTCCTTCTCTTTCAATGCCTCCACACCAAAACCATTCTCCACCCTCTGCTCCACATTGCAACAACCACAACCCCAACAAGAACAACCCACCAACGCTAAGAAGAAGCTCTTTATCTTTAACTTACCCTGGTCTATGTCCGTTGCCGACATCAAACACCTCTTTTCCCAATGCGGAACTGTAACCGATGTCGAGATCATAAAGAACAAAGAAGGCAGAGGCAGGCGTTTTGCCTTCGTAACTATGGCTTCTGGTGAACAAGCTCTTGCTGTCCTTAACAAGTTCAATTCCTATCAAATATCAGGAAGGGAAATAAGGATTGAGCTTGCAAAGAGATTCAAGAAGCCACCTCCTCCTACACCGCCGTCTCCTACTCCCCCTCCAGGTGAGACACGTCATGTGGTATATGTAGCCAACCTTGCATGGAAAGTAAGATCACCCCAACTCAGACAATTCTTCACTGATAACTTCAAAACACCCGTTTCTGCCAAGGTTGTCTTTGACAGCCCTGCCGGAAGATCTGCAGGGTATGGATTTGTTTCTTTCCTCACAAAAGAGGATGCAGAGGCTGCAGTTTCTGCTTTGGATGGGAAGGAATTAATGGAGCGACCGATTCGCCTTAAGTTGAGTGAAAAGAAAGTCAAAGCAGCTCCAACTGAAAAGGACGAAGACCAAGCTCCTCAACTGGATCACGAGAAACTCGAAGAAGCTGCAACTGAAAAGGAGGACGAAACCCATGATTCTGATGCTCAGCTGCAACAATCATAA 897 0.4705 MAATSLDSALSILASHSHPFTRLSPKPPDSIKLHTSLSPLSFSSSFSFNASTPKPFSTLCSTLQQPQPQQEQPTNAKKKLFIFNLPWSMSVADIKHLFSQCGTVTDVEIIKNKEGRGRRFAFVTMASGEQALAVLNKFNSYQISGREIRIELAKRFKKPPPPTPPSPTPPPGETRHVVYVANLAWKVRSPQLRQFFTDNFKTPVSAKVVFDSPAGRSAGYGFVSFLTKEDAEAAVSALDGKELMERPIRLKLSEKKVKAAPTEKDEDQAPQLDHEKLEEAATEKEDETHDSDAQLQQS 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211495g00006 298 SUPERFAMILY RNA-binding domain, RBD 159 259 IPR035979 GO:0003676
Stsc211495g00006 298 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 78 155 IPR000504 GO:0003723
Stsc211495g00006 298 Gene3D - 159 269 IPR012677 -
Stsc211495g00006 298 Gene3D - 59 158 IPR012677 -
Stsc211495g00006 298 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 178 249 IPR000504 GO:0003723
Stsc211495g00006 298 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 80 149 IPR000504 GO:0003723
Stsc211495g00006 298 SUPERFAMILY RNA-binding domain, RBD 63 166 IPR035979 GO:0003676
Stsc211495g00006 298 CDD RRM_SF 80 151 - -
Stsc211495g00006 298 MobiDBLite consensus disorder prediction 251 298 - -
Stsc211495g00006 298 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 176 255 IPR000504 GO:0003723
Stsc211495g00006 298 PANTHER OS02G0815200 PROTEIN 18 256 - -
Stsc211495g00006 298 SMART rrm1_1 79 151 IPR000504 GO:0003723
Stsc211495g00006 298 SMART rrm1_1 177 251 IPR000504 GO:0003723
Stsc211495g00006 298 MobiDBLite consensus disorder prediction 251 292 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211495g00006 Stsc-Chr211495 75019 77482 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211495g00006 80 256 Eukaryotic Initiation Factors Gene Family AT1G34140 29.255 1.07e-17 80.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211495g00006 - - lang:109349094 300.827