Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211494g00013 ATGAGTAGCAGGTTTCCTTTCACTCCATCACAGTGGCAAGAACTTGAACACCAAGCTCTAATATTCAAGTACATGGCTTCAGGTATCACCATCCCACCTCATCTTCTCAAAAGAAGCCATTTCCATAATAATAATAATCTTCATTTCTCTTCTGCTCCAACGATTTTGCCTCATCACCAACCACCATCACAGCACCCCCATTTTGGATGGAAGTATATTGTTGAAATGGGTTTGGGAAGAAAAGTAGAGAGAGAACCAGGAAGGTGCAGAAGAACAGATGGGAAGAAATGGAGGTGCTCAAAAGAGGCATACCCAGATTCAAAGTACTGTGAGAGGCACATGCACCGAGGCAAAAACCGTTCAAGAAAGCCTGTGGAACTTTTATTCAAAACAACAAACACAAATAATATTAATGCTTCTTCACCAACACTACCCACCAATCACCACACTCCATTCAAGTCATCATCTCCTGCTGCTTTTTCATTTCAAGACGACACTAATACTGCTCCCTCCAGGTATGTGTATGGAGTGAAAGAGGATGTGGATGAACGTGCTTTCTTCACTGAACCTTCTGGAACAATGAAAAGCTTCTCTGGATCCTCCACCATTGATGATCCATGGCAACTCACACCATTGACTATGATCTCCTCTTCTTCTTCTTCATCATCCACAAAGCAGAGGAGTTGCACAACTTTATCAAACAACAGTGACTACTCATACTTGCAACTTCAGAATCTCAATGACCACTCAAAAAAACAAGAAGAAGAACATCATCATCATCATGAGAAGACTACTGTTCATAGCTTCTTTGATGAATGGCCCCACAAAGGCCTTGATTCCCATGACAAATCTTGTTCCTCCACAACCAAATTATCAATTTCCATTCCAACATCTTTTCATGATTTTCCCATCCTTCAATTCAAGAATTCAAACCTTTCATCATCATGTCAGTTATACTCTCTAAGGTTGAGCTTTATTTGCTTCGAAGAATGGGGTCATTGTACGGACAACATAGTACTTTGCAAGTGGGGTTCGGATTCTGAGGTCGCCCTCCGGACACAGGTGGATGTGGGTATGACAAGCTATAGTCTTGGTCAAGGAAATTGTGTGCTTGGATGCTCAATGGCGCGAAGAGAATCGCGTGTGAGCATTGAGCTTGGCATCCAGACTTTTCAGGTACAGGTTCAATGCTTGGAGGGTTGGCGAAGTATACTTTTGGATCCTACGAAGTCTAGCTTCTCCGAAGATCGAGTCTTCCGTCGCTCGTGCGGAGAACTAGGAGTATTGGTCTAG 1293 0.4285 MSSRFPFTPSQWQELEHQALIFKYMASGITIPPHLLKRSHFHNNNNLHFSSAPTILPHHQPPSQHPHFGWKYIVEMGLGRKVEREPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVELLFKTTNTNNINASSPTLPTNHHTPFKSSSPAAFSFQDDTNTAPSRYVYGVKEDVDERAFFTEPSGTMKSFSGSSTIDDPWQLTPLTMISSSSSSSSTKQRSCTTLSNNSDYSYLQLQNLNDHSKKQEEEHHHHHEKTTVHSFFDEWPHKGLDSHDKSCSSTTKLSISIPTSFHDFPILQFKNSNLSSSCQLYSLRLSFICFEEWGHCTDNIVLCKWGSDSEVALRTQVDVGMTSYSLGQGNCVLGCSMARRESRVSIELGIQTFQVQVQCLEGWRSILLDPTKSSFSEDRVFRRSCGELGVLV 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211494g00013 430 SMART QLQ_2 5 41 IPR014978 GO:0005524|GO:0005634|GO:0006355
Stsc211494g00013 430 Pfam WRC 85 126 IPR014977 -
Stsc211494g00013 430 Pfam QLQ 6 37 IPR014978 GO:0005524|GO:0005634|GO:0006355
Stsc211494g00013 430 PANTHER GROWTH-REGULATING FACTOR 5 6 298 IPR031137 GO:0005634|GO:0006351|GO:0032502
Stsc211494g00013 430 ProSiteProfiles QLQ domain profile. 6 41 IPR014978 GO:0005524|GO:0005634|GO:0006355
Stsc211494g00013 430 MobiDBLite consensus disorder prediction 136 164 - -
Stsc211494g00013 430 ProSiteProfiles WRC domain profile. 83 127 IPR014977 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211494g00013 Stsc-Chr211494 118481 124163 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211494g00013 4 126 GRF Transcription Factor Family AT3G13960 57.724 1.56e-41 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Stsc211494g00013 WRC 7.3e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211494g00013 - - aip:107630472 389.423