Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211493g00016 ATGATTGGATTTGATCTCTACCAGGTAAAGCCTGCTTTGTCTGTTCTCCGGGAGCTCATTTACTTGAATGATGAAGAAGTTCTAACAGATGCATGCTGGGCTCTCTCTTACCTTTCAGACGGCCCAAATGAAAAAATTCAAGCTGTAATTGAAATAGGAGTCTGCCCAAGACTTGTGGAGCTCTTGCTACATCCATCACCTACAGTTCTTATACCTGCTCTTCGAACTGTAGGAAATATTGTTACTGGTGATGATGCTCAGACTCAGTTTGTAATTGATAATGGAGTTCTCCCCTGTCTTCATCAACTTCTTTCACAAAATAACAAGAAAAACATCAGGAAAGAAGCTTGTTGGACGATATCAAATATCACAGCTGGGAATAGAATTCAAATACAGGCTGTCATTGAGGCCAACGTTATTCCTCCTCTTGTCAATCTTCTTCAGCATGCAGAATTTGAAATCAAGAAGGAAGCTGCATGGGCCATCTCCAATGCAACTTCTGGAGGATCTCTTGAGCAGATTCAGTTCCTGGCAAGTCAAGGTTGCATCAAGCCATTGTGTGATCTCTTGACATGTCCTGACCCAAGGATTGTGACAGTTTGTCTTGAGGGGCTGGATAACATTTTAAAGGTTGGAGAAGCTGACAAGGAAATGGGACTCAACGGTGGGATCAATGTTTACGCTCAAATGGTTGACGAATGTGAAGGATTGGATAAGATTGAAAATCTACAGACCCATGACAACAATGAGATTTATGAGAGGGCTGTGAAGATTTTGGAGAGATATTGGGCTGAGGATGAATTGGAAGTAGAGCAGAATCAGAATGGTGGGGATGGTACTCAGCAAGGTTTTTCTTTCGGGGCTAACCAGCCGAACCTCCCGCCAGGTGGTTTTAATTTCGGGTGA 906 0.4294 MIGFDLYQVKPALSVLRELIYLNDEEVLTDACWALSYLSDGPNEKIQAVIEIGVCPRLVELLLHPSPTVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLHQLLSQNNKKNIRKEACWTISNITAGNRIQIQAVIEANVIPPLVNLLQHAEFEIKKEAAWAISNATSGGSLEQIQFLASQGCIKPLCDLLTCPDPRIVTVCLEGLDNILKVGEADKEMGLNGGINVYAQMVDECEGLDKIENLQTHDNNEIYERAVKILERYWAEDELEVEQNQNGGDGTQQGFSFGANQPNLPPGGFNFG 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211493g00016 301 Pfam Atypical Arm repeat 225 272 IPR032413 -
Stsc211493g00016 301 SMART arm_5 42 82 IPR000225 GO:0005515
Stsc211493g00016 301 SMART arm_5 84 125 IPR000225 GO:0005515
Stsc211493g00016 301 SMART arm_5 170 210 IPR000225 GO:0005515
Stsc211493g00016 301 SMART arm_5 127 167 IPR000225 GO:0005515
Stsc211493g00016 301 SMART arm_5 5 40 IPR000225 GO:0005515
Stsc211493g00016 301 SUPERFAMILY ARM repeat 8 265 IPR016024 -
Stsc211493g00016 301 MobiDBLite consensus disorder prediction 273 301 - -
Stsc211493g00016 301 MobiDBLite consensus disorder prediction 273 289 - -
Stsc211493g00016 301 Pfam Armadillo/beta-catenin-like repeat 172 208 IPR000225 GO:0005515
Stsc211493g00016 301 Pfam Armadillo/beta-catenin-like repeat 43 81 IPR000225 GO:0005515
Stsc211493g00016 301 Pfam Armadillo/beta-catenin-like repeat 84 125 IPR000225 GO:0005515
Stsc211493g00016 301 Pfam Armadillo/beta-catenin-like repeat 130 166 IPR000225 GO:0005515
Stsc211493g00016 301 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 95 127 IPR000225 GO:0005515
Stsc211493g00016 301 Gene3D - 4 264 IPR011989 -
Stsc211493g00016 301 PANTHER IMPORTIN ALPHA 8 267 - -
Stsc211493g00016 301 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 138 166 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211493g00016 Stsc-Chr211493 88106 90275 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211493g00016 53 164 U-box Gene Family AT5G42340 30.088 2.56e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211493g00016 K15042 - twl:120010604 516.153