Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211493g00013 ATGTCGTCTCTGCAATCAAACGCCGATTCCACAAATTCGGAACCGTTGCAACGATCCAATCCCAAGAAGCGCCGCAAAATTGGACACACCAATTCCCCCACCCTCGTTCCATGGAGATCCGACACGCAACAGCGGATCTACTCTTCCAAGCTCGCTCACGCTCTCCGCCACGTCCTCCGTCGGAATCATCCGCCGCCGCCGGCAAAGTCTAATACCGGCCGGGAGGTTCGGGAGACCGCCGACCGAGTCCTCGCTGCCACTGCAAAAGGCCGGACTCGGTGGAGTCGCGCTATTCTTGCTAGTCCACTCAACCGGTGGAAGCTCCGGAGGATGCACAAGAAGGTTCGCAAGGCTGCCACCGGATTGGCGAAGAGGTCGCCGGAGACGCGCCGGAGGTTGCCGGTGGTACAGAAGAAAGCGCGGGTTCTCGGGCGGTTAGTCCCCGGATGCCGGAAGCTCTCGTTCCCGAACCTTTTAGAAGAAGCCACAGACTACATCTCGGCGTTGGAGATGCAGGTGAGAGCCATGACGGCACTGACCGAGTTACTCACCGGCGGCACGTCACACGCCTCGGCTTGA 579 0.601 MSSLQSNADSTNSEPLQRSNPKKRRKIGHTNSPTLVPWRSDTQQRIYSSKLAHALRHVLRRNHPPPPAKSNTGREVRETADRVLAATAKGRTRWSRAILASPLNRWKLRRMHKKVRKAATGLAKRSPETRRRLPVVQKKARVLGRLVPGCRKLSFPNLLEEATDYISALEMQVRAMTALTELLTGGTSHASA 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211493g00013 192 CDD bHLH_AtIBH1_like 130 180 IPR044549 GO:0006355
Stsc211493g00013 192 MobiDBLite consensus disorder prediction 57 78 - -
Stsc211493g00013 192 MobiDBLite consensus disorder prediction 1 17 - -
Stsc211493g00013 192 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 130 186 IPR036638 GO:0046983
Stsc211493g00013 192 PANTHER TRANSCRIPTION FACTOR IBH1-LIKE 1 39 183 IPR044660 GO:0006355
Stsc211493g00013 192 MobiDBLite consensus disorder prediction 1 41 - -
Stsc211493g00013 192 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 120 169 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211493g00013 Stsc-Chr211493 67381 68368 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211493g00013 31 176 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09250 50.323 1.26e-41 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211493g00013 - - qsa:O6P43_011026 221.476