Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211492g00017 ATGTCAATGCTGGTTACTGAGGATGGCAACAACAACAATAGTAAGGCTCATTTTGTTGTTGACATAGACAATAATGTCTCTCAAGGTAGTGGTAGTAGCTGTGTCGGCAATGAAGGTTGTGCTTCTTCTGAGACCAGTGAGGAACAACAACAACAACAAAGTAGTTCCCATGATTCTGGTTCCGAGATTGTTGCTGGAGCCATTGAGAAAGAGAGAGGGTCTTCAGTTTCATCAGATCAGTGTTCTGTGGAGCTTGTGGATCTGGAGAGTGATGTGGATAAGGTACGGCATTTAGATCATAACAAGGTGGAGAGGGATTGCAGGATTTGTCACCTAAGCATGGATATGACCAACCATGAATCTGGTGGGTCCCCCATTGAGCTTGGTTGTTCTTGTAAGGATGATTTGGCTGCTGCTCACAAACACTGTGCTGAGGCTTGGTTCAAGATCAAGGGCAACAAAACTTGTGAAATTTGTGGATCAATTGCACACAATGTAGCCGGCACAATCGAAAAGCTTGGAGTTGCTAATTCAAAACGGGTATTAAAGCTGTTTTACAAGGCACCTGTTGCTGTTGTTTCCGAGCATGTGCAGTATAGCCCGTTCGTTATTAATAGTGACGACGACTTAGAGCATCCCCCATCCATTCACATTGGGGGCTCTTCAAGTTTGCCTCCTCCTGCTGAACCAGCTATACCAGTTATTCCACCACTCGTTGCATCTCCTTCCTTCGCTGCTGACTTGCATCCCGATGATGACGATGAGTGTGACTTGGATGATAACCGCACGTTTGGTGAGCTCGTGACGGCAATTGCTAGCAATCCACGCAGCCCTCAGATTGGAGTACAGATCAGCGAGCCTGAAGGGGTTGAAGAAGCGCTACGTGAAGATGAAGAGGAGGAAGAACCAGAGTTGATTGCTGATGACAGTGATGAGGACGACCAGAGCATTCCGCCCCTACGCCGTGCACCGTGCAGTTCTGGGTCACATCAATACCCGAAACACTTCTCTTCCTTGGACCTCGAATCCATCGCACCAACACTTGAAGAGAATGATGCAGGTGCTGGGTTCGGTGGCGGGAGTTCGGTGGATGTGCTAACTCCGGCGACCTGCACAACCCGCCTACTCGATGCCCTGCAAAGGCACCTGTACAACCAAGCAAGGGTCGCGGATCCCCAGCTATAA 1185 0.4878 MSMLVTEDGNNNNSKAHFVVDIDNNVSQGSGSSCVGNEGCASSETSEEQQQQQSSSHDSGSEIVAGAIEKERGSSVSSDQCSVELVDLESDVDKVRHLDHNKVERDCRICHLSMDMTNHESGGSPIELGCSCKDDLAAAHKHCAEAWFKIKGNKTCEICGSIAHNVAGTIEKLGVANSKRVLKLFYKAPVAVVSEHVQYSPFVINSDDDLEHPPSIHIGGSSSLPPPAEPAIPVIPPLVASPSFAADLHPDDDDECDLDDNRTFGELVTAIASNPRSPQIGVQISEPEGVEEALREDEEEEEPELIADDSDEDDQSIPPLRRAPCSSGSHQYPKHFSSLDLESIAPTLEENDAGAGFGGGSSVDVLTPATCTTRLLDALQRHLYNQARVADPQL 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211492g00017 394 PANTHER ZINC FINGER, RING-CH-TYPE 23 172 - -
Stsc211492g00017 394 SUPERFAMILY RING/U-box 103 162 - -
Stsc211492g00017 394 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 92 168 IPR013083 -
Stsc211492g00017 394 SMART ringv_2 106 160 IPR011016 GO:0008270
Stsc211492g00017 394 MobiDBLite consensus disorder prediction 291 313 - -
Stsc211492g00017 394 CDD RING_CH-C4HC3_MARCH 107 160 - -
Stsc211492g00017 394 MobiDBLite consensus disorder prediction 278 334 - -
Stsc211492g00017 394 Pfam RING-variant domain 107 159 IPR011016 GO:0008270
Stsc211492g00017 394 ProSiteProfiles Zinc finger RING-CH-type profile. 99 166 IPR011016 GO:0008270
Stsc211492g00017 394 MobiDBLite consensus disorder prediction 33 61 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211492g00017 Stsc-Chr211492 143793 152684 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211492g00017 65 171 C3H Transcription Factor Family AT5G05830 62.069 1.77e-35 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211492g00017 - - adu:107457785 295.819