Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211492g00016 ATGACCGAAGAAGAAGACCGACCATCCGTTGAACCAAACGCCGGCAATGGCGATGCTCTTCACAAAGACGGAGGAGGAGGTGCGGCCGAGGCGGAGCAAACGGGAGCCGATGCAGAGGTGATGGTAGTTGGTGATGGTGAGGGCAATAGTGGTGTTGGTGGTGCGGCGGGAAAAGTGAAGGGACCGTGGTCTCCGGAAGAGGATGCGGTGCTGAGCCGATTGGTGTCGCAGTTTGGAGCGAGGAATTGGAGCATGATCGCCAGGGGAGTTCCAGGCCGGTCAGGGAAGTCTTGCCGTCTCCGATGGTGTAACCAACTCGACCCTTGTGTTAAACGCAAGCCTTTCACTGAGGAAGAAGATAGCATTATAGTGTCAGCCCATGCAATCCATGGAAACAAGTGGGCAGCTATTGCAAGGCTTCTTCCTGTTGGGGATATGAATTCATATCCTACACAAGTTAGAAATGTTGTGACGAATACTGAAATTAAACAGCACGAAGATAAACCTTCAACTCCAAGAAATGATGTTTCTGAAGTGGAGCAAAATCCAACCCTTCATCGACCAATAGCACGTATTAGTGCATTTAGTGTTTATAATCCTACAAGCAGGCCTACAAATGGATCATCAAGTTCAAAGTTTCTACCATTGCAAAGCCCTTTGATCCAACTACCCAAAGCAGGTGAAGGAGCCTGCAAATTATTTGATGGTATTGGATGTGAGCCAATGGTTCCATTGCAATGTGGTCATGGATGCTGTGTACCAGAATCAGGGGGAAGCCATTCTCATGGTTCTTCGCTATTAGGTCCCGAGTTTGTTGACTATTTGGAATCTCCCGCTTTCTTAAGTCGTGAACTGATTTCCATAGCTACAGACCTAAATAACATGGCATGGATCAAGAGTGGCCTTGAGAACCATGGAGGTGCCAAAGTAACCGATAATGCCACAAACTTAACAGCGTCACAGGGGGTTGCTACTGCTTCACAAACGGGATTCTTAGGCCAAGGCCAAAAGAATGACTACATTCAAATGCAAATGCAAATGCAATATGAGGAGGGATCAGGTAATGACAGGTTTCTGGGTGCAAATACAATGAAAGAAATGTTATCGTCGAAGATGCCTCGACAACATTTCGCAATGCCTGCAGAAGTTTGA 1152 0.4714 MTEEEDRPSVEPNAGNGDALHKDGGGGAAEAEQTGADAEVMVVGDGEGNSGVGGAAGKVKGPWSPEEDAVLSRLVSQFGARNWSMIARGVPGRSGKSCRLRWCNQLDPCVKRKPFTEEEDSIIVSAHAIHGNKWAAIARLLPVGDMNSYPTQVRNVVTNTEIKQHEDKPSTPRNDVSEVEQNPTLHRPIARISAFSVYNPTSRPTNGSSSSKFLPLQSPLIQLPKAGEGACKLFDGIGCEPMVPLQCGHGCCVPESGGSHSHGSSLLGPEFVDYLESPAFLSRELISIATDLNNMAWIKSGLENHGGAKVTDNATNLTASQGVATASQTGFLGQGQKNDYIQMQMQMQYEEGSGNDRFLGANTMKEMLSSKMPRQHFAMPAEV 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211492g00016 383 MobiDBLite consensus disorder prediction 162 181 - -
Stsc211492g00016 383 ProSiteProfiles Myb-like domain profile. 107 155 IPR001005 -
Stsc211492g00016 383 PANTHER MYB PROTEIN-RELATED 60 174 - -
Stsc211492g00016 383 SUPERFAMILY Homeodomain-like 57 142 IPR009057 -
Stsc211492g00016 383 CDD SANT 114 142 IPR001005 -
Stsc211492g00016 383 FunFam MYB transcription factor 60 111 - -
Stsc211492g00016 383 CDD SANT 62 104 IPR001005 -
Stsc211492g00016 383 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 111 144 IPR017930 -
Stsc211492g00016 383 Gene3D - 59 111 - -
Stsc211492g00016 383 MobiDBLite consensus disorder prediction 1 63 - -
Stsc211492g00016 383 Pfam Myb-like DNA-binding domain 60 106 IPR001005 -
Stsc211492g00016 383 Pfam Myb-like DNA-binding domain 112 142 IPR001005 -
Stsc211492g00016 383 Gene3D - 114 165 - -
Stsc211492g00016 383 SMART sant 59 108 IPR001005 -
Stsc211492g00016 383 SMART sant 111 163 IPR001005 -
Stsc211492g00016 383 ProSiteProfiles Myb-like domain profile. 55 106 IPR001005 -
Stsc211492g00016 383 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 55 110 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211492g00016 Stsc-Chr211492 138047 141056 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211492g00016 58 341 MYB Transcription Factor Family AT3G55730 40.922 5.75e-76 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc211492g00016 Myb_DNA-binding 5.3e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211492g00016 K09422 - qsu:112007270 347.051