Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211492g00001 ATGGAACTGGAAAGTGTGTATCCTCCTTCTTGGAATTGGAATTGGAATTTGTTAGTTGAAGAGAGGCAGAGCAGCAGCAGAGAATGGAGCAAAGAGGAGAACAAGAAGTTCGAGAGCGCGCTCGCGATTTTCGATAAGGAAACGCCGGATAGGTGGCTGAAGGTGGCTGCTATGATCCCCGGAAGGAGTGTTTATGATGTGATCAAGCAGTACAAGGAATTGGAAGATGATGTCAATGACATCGAAGCCGGCCGAGTACCCGTCCCCGGCTACATCGCCTCTTCTTTCACCTTTGAGCTTCTTCACAACCACAACCATGATGGATCTCGAAGAAGGTCTAACGCCGGTGTTAGACCTTCTTCTGATCAAGAAAGGAAGAAAGGTGTTCCTTGGACTCAAGAGGAGCATAGACGATTTCTAATGGGGCTTTTGAAGTATGGAAAAGGAGATTGGAGAAACATTTCGCGAAATTTCGTGGTGACGAAGACTCCTACACAAGTTGCTAGCCATGCTCAGAAGTATTACATAAGGCAAAAGGTATCTTCTGGTGGAGGGAAAGATAAGAGGAGACCAAGCATCCATGATATAACAACTCTTAACCTTGCAGAAGCTGCTGCAACATTAGATGATAATAATAATAATAATACTACTAATAACAACAACAACAAGAAGCCCCTGGATTGGTTCAATCAGTGTAATGATGATGGAGCAGTGATGGTTTTCAATCCCAATTGCGATTTCATGTCTTCTTCGCCGGACGATATGGCTTCCAAGGCCTTCTTCAAACAGCAAGGGCATCAGGATCTGTTTGATTGTGCCTTCCATGAAGCTTATGCAAAGCTGAAGATCCCCCATTTCGGATCCTCAGCTGCAGGATTCAACAAGGAAGCTGCTGATTTTGGTATTCATGCATTGTAA 918 0.4455 MELESVYPPSWNWNWNLLVEERQSSSREWSKEENKKFESALAIFDKETPDRWLKVAAMIPGRSVYDVIKQYKELEDDVNDIEAGRVPVPGYIASSFTFELLHNHNHDGSRRRSNAGVRPSSDQERKKGVPWTQEEHRRFLMGLLKYGKGDWRNISRNFVVTKTPTQVASHAQKYYIRQKVSSGGGKDKRRPSIHDITTLNLAEAAATLDDNNNNNTTNNNNNKKPLDWFNQCNDDGAVMVFNPNCDFMSSSPDDMASKAFFKQQGHQDLFDCAFHEAYAKLKIPHFGSSAAGFNKEAADFGIHAL 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211492g00001 305 SMART sant 25 77 IPR001005 -
Stsc211492g00001 305 SMART sant 127 177 IPR001005 -
Stsc211492g00001 305 MobiDBLite consensus disorder prediction 104 132 - -
Stsc211492g00001 305 Gene3D - 129 180 - -
Stsc211492g00001 305 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 123 179 IPR017930 -
Stsc211492g00001 305 ProSiteProfiles Myb-like domain profile. 123 175 IPR001005 -
Stsc211492g00001 305 ProSiteProfiles SANT domain profile. 131 179 IPR017884 -
Stsc211492g00001 305 Gene3D - 20 88 - -
Stsc211492g00001 305 NCBIfam myb-like DNA-binding domain, SHAQKYF class 126 178 IPR006447 GO:0003677
Stsc211492g00001 305 ProSiteProfiles Myb-like domain profile. 21 75 IPR001005 -
Stsc211492g00001 305 FunFam Transcription factor SRM1 21 88 - -
Stsc211492g00001 305 CDD SANT 28 74 IPR001005 -
Stsc211492g00001 305 Pfam Myb-like DNA-binding domain 130 174 IPR001005 -
Stsc211492g00001 305 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 23 237 IPR043363 -
Stsc211492g00001 305 ProSiteProfiles SANT domain profile. 24 79 IPR017884 -
Stsc211492g00001 305 FunFam transcription factor MYB1R1 129 180 - -
Stsc211492g00001 305 CDD SANT 130 174 IPR001005 -
Stsc211492g00001 305 SUPERFAMILY Homeodomain-like 27 81 IPR009057 -
Stsc211492g00001 305 SUPERFAMILY Homeodomain-like 125 179 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211492g00001 Stsc-Chr211492 2225 4018 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc211492g00001 Myb_DNA-binding 2.7e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211492g00001 - - gmx:778039 370.548