Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211491g00005 ATGCAAGGTGGATTAGAGTTACCGCCGGGGTTCAGGTTCCACCCAAGCGACGAAGAATTAGTGAACCACTATCTCTGCAAGAAATGCGCAAAGCAATCAATTGCAGCTCCAATAATCAAAGAGATCGATTTGTACAAGTTCGATCCATGGCAGCTTCCAGAAATGGCCTTGTATGGAGAAAAGGAATGGTACTTCTTTTCGCCGAGGGACAGAAAATATCCTAATGGATCCCGGCCGAACAGGGCGGCCGGGAGCGGGTATTGGAAGGCGACAGGGGCTGATAAGCCGATAGGGAAGCCGAAGGCGCTTGGGATAAAGAAAGCGTTAGTGTTCTACGCCGGAAAGGCCCCTAAAGGGGTGAAGACTAATTGGATTATGCATGAATACCGTCTTGCCAATGTTGACAGATCCGCCGCCAACAAGCACAACAACAATAACTTGAGGCTTGATGATTGGGTGTTGTGTAGAATCTACAACAAGAAAGGGAAGATTGAGAAATTCAACTCCCCCACAGCAGGGTTTGAACAGAAAGTATCAAAGTTTTCACCAGGGGAGATACTTCACTATGATCATGATCATGAACATGAAACTAAGCCTCAGATTATCCATAACTTCTCCAACAATGACCACCAATTGTACATGGACACATCAGATTCTGTTCCTAGGCTGCACACGGACTCTAGCTGCTCGGATCACGCGGTTTCGCCGGCGTCCGGGGACAAGGAGGTGGAGAGCAACCCAAAGTGGAAGAACAATGAGCTAGATATGCAGCTGTTTGATGCCTTTGATTTTCAGCTCAACAGCTATGATAATAACCTCCCAATGGAAGATGACCTTTTTGGAAATCAGTTCCAAATGAACCAGCTCATGTCATTCCAAGACAATTTCTTGTTCCAACAAAAGCCATTTTGA 912 0.4627 MQGGLELPPGFRFHPSDEELVNHYLCKKCAKQSIAAPIIKEIDLYKFDPWQLPEMALYGEKEWYFFSPRDRKYPNGSRPNRAAGSGYWKATGADKPIGKPKALGIKKALVFYAGKAPKGVKTNWIMHEYRLANVDRSAANKHNNNNLRLDDWVLCRIYNKKGKIEKFNSPTAGFEQKVSKFSPGEILHYDHDHEHETKPQIIHNFSNNDHQLYMDTSDSVPRLHTDSSCSDHAVSPASGDKEVESNPKWKNNELDMQLFDAFDFQLNSYDNNLPMEDDLFGNQFQMNQLMSFQDNFLFQQKPF 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211491g00005 303 Pfam No apical meristem (NAM) protein 8 131 IPR003441 GO:0003677|GO:0006355
Stsc211491g00005 303 Gene3D NAC domain 16 165 IPR036093 GO:0003677|GO:0006355
Stsc211491g00005 303 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 6 226 - -
Stsc211491g00005 303 ProSiteProfiles NAC domain profile. 7 160 IPR003441 GO:0003677|GO:0006355
Stsc211491g00005 303 MobiDBLite consensus disorder prediction 224 247 - -
Stsc211491g00005 303 FunFam NAC transcription factor 16 164 - -
Stsc211491g00005 303 SUPERFAMILY NAC domain 4 160 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211491g00005 Stsc-Chr211491 30361 32667 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211491g00005 1 303 NAC Transcription Factor Family AT1G01720 58.599 4.60e-121 347
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Stsc211491g00005 NAM 8.9e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211491g00005 - - adu:107463232 597.045