Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211491g00002 ATGGGAGACGGAGGTTCCGGCAACCGCGGCGGCAACAGCAACAACAGCGGCGGCGGAAGCAACAAGCCGGAGTGGCTCCAGCAATACGATCTCATAGGCAAGATCGGAGAAGGCACCTACGGTCTCGTGTTCTTGGCGCGCATAAAGTCCCAAACCAATCGCGGTAAATCCATTGCCATCAAGAAATTCAAGCAGTCCAAAGATGGCGACGGTGTTTCTCCCACCGCTATTCGCGAAATCATGCTGCTGAGGGAGATAACCCACGAGAATGTTGTGAAGCTTGTAAATGTGCACATCAATCACGCGGATATGTCTCTGTATCTTGCTTTTGATTACGCCGAGCACGATCTTTATGAAATAATTAGACATCATAGGGACAAAGTCAACCATTCCATTAATCAGTACACTGTTAAATCATTACTCTGGCAGTTGCTCAATGGACTAAACTATCTGCACAGCAATTGGATAATACATAGAGATTTAAAGCCCTCAAATATACTGGTTATGGGTGAAGGCGAGGAGCATGGGGTTGTTAAAATTGCTGACTTTGGACTTGCAAGGATATATCAAGCCCCTTTGAAGCCTTTATCTGAAAATGGGGTTGTTGTAACCATTTGGTATCGTGCTCCTGAGTTGCTTCTTGGAGCAAAACATTATACTAGTGCTGTTGATATGTGGGCTGTGGGATGCATTTTTGCTGAGTTGTTGACGTTGAAGCCACTATTTCAAGGTGTAGAAGTCAAAGCTACACCAAATCCCTTTCAGCTTGATCAACTAGACAAGATATTCAAGGTTTTAGGCCATCCCACATTAGAAAAGTGGCCTTCCTTAGCAAATCTTCCCCATTGGCAACAAGATGTGCAACATATACAAGGGCATAAATATGATAACAACAGCCTCTATAATGTTGTTCATCTATCTCCAAAAAGTCCTGCATTTGACCTTTTGTCAAAGATGCTTGAATATGATCCTCGAAAGCGTATTACAGCAGCACAAGCTTTGGAACATGAGTATTTCAAAATAGAACCACAACCTGGGCGGAATGCCCTTGTACCCTGCCAACCGGGAGAGACATTTGTGAATTATCCCACTCGTCCAGTGGACACAACAACTGATTTTGAAGGGACAACCAATATGCAACCTCCACAGCCGAGTCAGGTTACATCAGGAGCTGGAGTTTCTGGCAGTATGCCCGGTGGTCATGTGTCAAACAGATCTGTTCCTCGACCAATGAATGTCGTTGGGATGCAAAGAATGCCTCACCAGGCAATGCAAGCTTATAATAATCTTACATCTCAGGCAGGGATGGGTCCTGGAATGAATCCTGGTGGCATGCCGATGCAACGAGGTGTACCACAGCCCCATCAGCAACAGCAGTTGAGAAGAAGAGACCAAATGGGGATGCCAGGGTACCCTCAACAAAAGTCAAGACGTATATAA 1440 0.4535 MGDGGSGNRGGNSNNSGGGSNKPEWLQQYDLIGKIGEGTYGLVFLARIKSQTNRGKSIAIKKFKQSKDGDGVSPTAIREIMLLREITHENVVKLVNVHINHADMSLYLAFDYAEHDLYEIIRHHRDKVNHSINQYTVKSLLWQLLNGLNYLHSNWIIHRDLKPSNILVMGEGEEHGVVKIADFGLARIYQAPLKPLSENGVVVTIWYRAPELLLGAKHYTSAVDMWAVGCIFAELLTLKPLFQGVEVKATPNPFQLDQLDKIFKVLGHPTLEKWPSLANLPHWQQDVQHIQGHKYDNNSLYNVVHLSPKSPAFDLLSKMLEYDPRKRITAAQALEHEYFKIEPQPGRNALVPCQPGETFVNYPTRPVDTTTDFEGTTNMQPPQPSQVTSGAGVSGSMPGGHVSNRSVPRPMNVVGMQRMPHQAMQAYNNLTSQAGMGPGMNPGGMPMQRGVPQPHQQQQLRRRDQMGMPGYPQQKSRRI 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211491g00002 479 Gene3D Transferase(Phosphotransferase) domain 1 112 353 - -
Stsc211491g00002 479 MobiDBLite consensus disorder prediction 376 393 - -
Stsc211491g00002 479 FunFam Cyclin-dependent kinase e-1 17 112 - -
Stsc211491g00002 479 FunFam Putative cyclin-dependent kinase E-1 113 352 - -
Stsc211491g00002 479 MobiDBLite consensus disorder prediction 7 22 - -
Stsc211491g00002 479 SMART serkin_6 29 339 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211491g00002 479 CDD STKc_CDK8_like 28 339 - -
Stsc211491g00002 479 Pfam Protein kinase domain 29 339 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211491g00002 479 ProSitePatterns Protein kinases ATP-binding region signature. 35 62 IPR017441 GO:0005524
Stsc211491g00002 479 PANTHER CELL DIVISION PROTEIN KINASE 27 344 - -
Stsc211491g00002 479 ProSitePatterns Serine/Threonine protein kinases active-site signature. 156 168 IPR008271 GO:0004672|GO:0006468
Stsc211491g00002 479 MobiDBLite consensus disorder prediction 1 22 - -
Stsc211491g00002 479 SUPERFAMILY Protein kinase-like (PK-like) 24 340 IPR011009 -
Stsc211491g00002 479 MobiDBLite consensus disorder prediction 376 407 - -
Stsc211491g00002 479 Gene3D Phosphorylase Kinase; domain 1 19 111 - -
Stsc211491g00002 479 MobiDBLite consensus disorder prediction 432 479 - -
Stsc211491g00002 479 ProSiteProfiles Protein kinase domain profile. 29 339 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211491g00002 Stsc-Chr211491 5894 11895 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211491g00002 22 479 Core Cell Cycle Gene Families AT5G63610 76.623 0.0 711
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CDK8 Stsc211491g00002 Pkinase 1.7e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211491g00002 K02208 - gmx:100813433 843.188