Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211490g00028 ATGAGTCGAGAACAGCATAAGAGAGGGAAGCAAGAAAAAGGTTCAGATGGTTCTGAGAAGGTTATTGTTGCTGTGAAAGCATCAAAGGAAATTCCAAAGACAGCACTTGTTTGGTCTCTCACTCATGTTGTTCAACCTGGGGATTGCATTACACTAATAGTGGTTGTGCCTTCACAAAGCTTTGGCAGAAGATTATGGGGTTTTCCAAGGTTTGCTGGTGACTGTGCCAACACTCACAAGAAACCTCCTCCACCAACTAGTTCAGAGCAGAAGAGTGATATTACTGATTCTTGCTCTCAGATGATTCTTCAGCTCCATGACATCTATGATCCAAATAAGATAAATGTCAAGATTAAAATTGTTTCTGGATCACCATGTGGAGCAGTTGCTGCAGAAGCCAGAAAGGCCCAAGCCAATTGGGTTGTATTAGACAAGCAGCTAAAACAAGAGGAAAAGCAGTGCATGGAAGAGCTGCATTGCAACATTGTTGTTATGAAACAATCCCAACCAAAAGTGCTCCGTTTGAATTTGATTGGATCACAAAAGAAGGATCTTGAAGAAGCAGCTCCATTATGTTCTGGGAAGCTTGGAAGACAAACCAATAATAAGAATGATTCTTTGAGTTCCATAAAAGGAGCAGTTGTCACCCCAACTAGCAGTCCTGATGTAGAGACTCCTTTTACCGCGACCGAAGCCGGTACTTCATCTGTTTCAAGCTCTGATCCTGGAGCTTCACCATTCTTTGTTTCTGAGATGAATGGTGAGTCAAAGAAAGAGGAAACTATTAAGGAAAATCAAGAAGTTGATACTACTAGTTCAGACTCAGACAGTGAAAAGTTTTCCACATCCTCAGCAAGCTTGAGATTCCAACCATGGATCAGAGATTTACTTTTATGTAAACAATCATCTCAATGCAGATCTCAAACATCCACAGCTAGAGCTTTGTTGGAGAAGTTCTCAAGGCTAGACAGAGAAGCTGAAATGGAGATCTCAAGCCATGTGAGTGAGTTGGATTTGAATGGAAATGGAAATAATGTAAGAGAAGCAATAGCATTATCAAGAAATGCTCCACCTGGTGCACCTCCATTGTGTTCAATATGTCAACACAAGGCTCCTGTTTTTGGGAAGCCTCCAAGGTGGTTCAGCTATGCCGAGTTGGAACTCGCTACTGGTAGATTCTCTCAAGCTAATTTCTTAGCAGAAGGGGGATTTGGCTCTGTCCACAGAGGGGTGTTACCTGATGGACAAGTCATTGCTGTGAAGCAGCATAAACTGGCTAGCTCTCAGGGTGATGTTGAATTTTGCTCAGAGGTTGAAGTCCTCAGCTGTGCTCAGCATCGAAACGTTGTAATGCTCATTGGATTCTGTATAGAGGATAAGAGAAGGCTGCTGGTTTATGAGTTCATATGCAATGGATCTCTGGACACTCACCTATATGGGAGAAAAAGAGAGCCATTAGAATGGTCAGCAAGGCAAAAAATTGCTGTAGGAGCTGCTAGAGGCTTGAGATATCTTCATGAGGAGTGCAGAGTAGGCTGCATTATCCACCGCGACATGCGGCCAAATAACATTCTTATCACCCATGATTTTGAGCCACTGGTTGGTGATTTTGGACTAGCAAGGTGGCAACCACATAGAGACACTGGTGTGGAGACCAGAGTGATTGGAACATTTGGGTATTTGGCTCCTGAATATGCTCAAAGTGGCCAAATAACAGAAAAGGCTGATGTTTACTCCTTTGGGGTGGTTTTGGTGGAGCTTGTTACCGGACGAAAAGCTGTCGATCTTGGTAGGCCGAAAGGGCAGCAATGTCTTACTGAATGGGCAAGGCCATTGCTAGCAGAAAATGCTGTTGAGGAACTAATTGATCCAAGGTTGGGAAATCATTATGCAGAAGATGAGGTCTATTGCATGCTTCATGCAGCTTCATTATGCATAAGGAGAGATCCTTATTCTAGACCTCGCATGTCACAGGTTCTCAGAATACTGGAGGGTGACATGATCATGGACACAAATAAATAA 2022 0.4313 MSREQHKRGKQEKGSDGSEKVIVAVKASKEIPKTALVWSLTHVVQPGDCITLIVVVPSQSFGRRLWGFPRFAGDCANTHKKPPPPTSSEQKSDITDSCSQMILQLHDIYDPNKINVKIKIVSGSPCGAVAAEARKAQANWVVLDKQLKQEEKQCMEELHCNIVVMKQSQPKVLRLNLIGSQKKDLEEAAPLCSGKLGRQTNNKNDSLSSIKGAVVTPTSSPDVETPFTATEAGTSSVSSSDPGASPFFVSEMNGESKKEETIKENQEVDTTSSDSDSEKFSTSSASLRFQPWIRDLLLCKQSSQCRSQTSTARALLEKFSRLDREAEMEISSHVSELDLNGNGNNVREAIALSRNAPPGAPPLCSICQHKAPVFGKPPRWFSYAELELATGRFSQANFLAEGGFGSVHRGVLPDGQVIAVKQHKLASSQGDVEFCSEVEVLSCAQHRNVVMLIGFCIEDKRRLLVYEFICNGSLDTHLYGRKREPLEWSARQKIAVGAARGLRYLHEECRVGCIIHRDMRPNNILITHDFEPLVGDFGLARWQPHRDTGVETRVIGTFGYLAPEYAQSGQITEKADVYSFGVVLVELVTGRKAVDLGRPKGQQCLTEWARPLLAENAVEELIDPRLGNHYAEDEVYCMLHAASLCIRRDPYSRPRMSQVLRILEGDMIMDTNK 673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211490g00028 673 ProSiteProfiles Protein kinase domain profile. 393 669 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211490g00028 673 CDD STKc_IRAK 399 665 - -
Stsc211490g00028 673 SUPERFAMILY Protein kinase-like (PK-like) 377 663 IPR011009 -
Stsc211490g00028 673 Gene3D Phosphorylase Kinase; domain 1 365 468 - -
Stsc211490g00028 673 ProSitePatterns Tyrosine protein kinases specific active-site signature. 514 526 IPR008266 GO:0004672|GO:0006468
Stsc211490g00028 673 FunFam Dual-specific kinase DSK1-like 12 166 - -
Stsc211490g00028 673 MobiDBLite consensus disorder prediction 195 246 - -
Stsc211490g00028 673 PANTHER OS01G0750732 PROTEIN 155 668 - -
Stsc211490g00028 673 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 365 468 - -
Stsc211490g00028 673 MobiDBLite consensus disorder prediction 253 274 - -
Stsc211490g00028 673 Pfam Protein tyrosine and serine/threonine kinase 397 662 IPR001245 GO:0004672|GO:0006468
Stsc211490g00028 673 MobiDBLite consensus disorder prediction 195 282 - -
Stsc211490g00028 673 CDD USP_Like 20 180 - -
Stsc211490g00028 673 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 469 672 - -
Stsc211490g00028 673 Gene3D Transferase(Phosphotransferase) domain 1 469 672 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211490g00028 Stsc-Chr211490 147201 150520 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211490g00028 373 673 Trihelix Transcription Factor Family AT1G70460 52.581 2.09e-101 323
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-2 Stsc211490g00028 PK_Tyr_Ser-Thr 1.3e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211490g00028 - - gmx:100789216 1138.64