Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211490g00027 ATGATTTTGCTCCTTTGGGTTTGGATTAGGGTTAGCTGTGAATTTCTTCAGCCCCATTTGCACCCCCATCAAAAAGGTCAAACCTTTCAAACCTTTTCTCTTTCAATGGAAGCTGAAGCTGATCCTCCTGAAACTGAAAACCCACCCAAAAGACACAAATGCTCTGCATGCTATAAGCAATACAAGAAAAAGGAGCATCTTATTGAGCACATGAAAACCTCTTACCACTCTTCTCATCAGCCTAGATGTGGGGTTTGTCAAAAGCACTGCAAATCTTTTGAGTCTCTCAGGGAACATCTTATCGGTCCTCTGCCAAAAGGACTTTGTTCAACAATTTTCTCTCAACAAGGTTGTCAACTTTGCTTGTCACTCTTTGATAGCGCCGTATCTCTTAGGGAGCATTTAGAAACATGCCGCCTATCTTCTCCTGCTCCTATGGGAACAGATGCAATGCCCTATATAAGCTCCCAAATTGATGATCAAGATTCTTCTGATGAAAATGGTGCTGGCGGACGTCCTAGAGCAATTGCAATGGATTGTGAAATGGTTGGCGGTGGGAGTGATGGATCGCTGGAAATGTGTGCAAGAGTATGCTTGGTTGACGAAGATGAGAATTTAATCTTCCACACATATGTGCAGCCAATAATCCCTGTTACTAACTACAGATATGATATAACTGGGTTGACTGAAGAGTATCTTAGAAATGCTATGCCACTGAAGGAAGTTCGGGAAAAGATATTACAAATTCTATACAATGGAGAATCCGTTGGCGGAGTTCTACGTGGGGGGAAGGCCAGGCTTCTTGTGGGCCATGACTTAGAACATGATTTAGATTGCTTGAAAATGAATTATCCCGAACACTTGATGAGGGACACTGCAAAGTATCGACCATTGATGAAGACCAACTTGGTTAGCCATTCGCTCAAGTATCTTACCCGAACATATCTAGGTTATGATATCCAAAGCGGCGCCCATGATCCATACGAAGACTGTATTTCTGTGATGAGACTTTATAAGAGAATTCGAGCTCAAACTCATAAGGAGGAACCCTATGGAACATTGACTTCCAATAACAACAACATCATGAGCAAGTCCCCTTGGCAATCCAAAGAAGTAAACAACCTCACACCAGATGAACTATTTGCCATGTCAAAATCAGACTACAGATGTTGGTGTTTGGATTTGAGACCAAAGTTGGCACCCTGA 1206 0.4237 MILLLWVWIRVSCEFLQPHLHPHQKGQTFQTFSLSMEAEADPPETENPPKRHKCSACYKQYKKKEHLIEHMKTSYHSSHQPRCGVCQKHCKSFESLREHLIGPLPKGLCSTIFSQQGCQLCLSLFDSAVSLREHLETCRLSSPAPMGTDAMPYISSQIDDQDSSDENGAGGRPRAIAMDCEMVGGGSDGSLEMCARVCLVDEDENLIFHTYVQPIIPVTNYRYDITGLTEEYLRNAMPLKEVREKILQILYNGESVGGVLRGGKARLLVGHDLEHDLDCLKMNYPEHLMRDTAKYRPLMKTNLVSHSLKYLTRTYLGYDIQSGAHDPYEDCISVMRLYKRIRAQTHKEEPYGTLTSNNNNIMSKSPWQSKEVNNLTPDELFAMSKSDYRCWCLDLRPKLAP 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211490g00027 401 Gene3D - 171 359 IPR036397 GO:0003676
Stsc211490g00027 401 Pfam Exonuclease 176 338 IPR013520 -
Stsc211490g00027 401 ProSitePatterns Zinc finger C2H2 type domain signature. 54 76 IPR013087 -
Stsc211490g00027 401 SUPERFAMILY Ribonuclease H-like 175 342 IPR012337 -
Stsc211490g00027 401 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 52 347 IPR047021 GO:0004527
Stsc211490g00027 401 ProSiteProfiles Zinc finger C2H2 type domain profile. 52 81 IPR013087 -
Stsc211490g00027 401 SMART exoiiiendus 174 347 IPR013520 -
Stsc211490g00027 401 CDD REX4_like 176 339 IPR037431 GO:0006364|GO:0008408
Stsc211490g00027 401 Gene3D Classic Zinc Finger 20 102 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211490g00027 Stsc-Chr211490 142862 146073 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211490g00027 51 394 C2H2 Transcription Factor Family AT3G27970 54.493 7.02e-138 396
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211490g00027 K18327 - gmx:100805841 602.823