Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211490g00025 ATGGCAGTAATGGAAGAAAAGCATGCTCTCCTCCATGGAACAATTGAAGCTACCATCTTTGATGCCACACCTTACTCACCTTCATTTCCCTTTAATTGTTTATTTCCAAATGGAAAGCCTGCTTATGTGACCATCAAAATAGGCAACAAGGTTGTAGCACAAACTACACAAGAAAGAGGGCGTGTGTGGAACCAAACATTTCAGATTCAATGTGCTCATCCATGTGATTCAACCATCACTATCACTCTGAAAACATCATGTTCCATATTGGGAAAATTCCAAATCCAGGCTCAACAACTGAAAGAAGGAAGCTTGATGAATGGTTTCCTCCCTCTCCTCATGGAAAATGGAAAACCAAGCACACAACTCAAACTGAGGTTCATATTATGGTTCAAGCCAGCAGATTTGGAGACAAGTTGGGCAAAGATAATTAGCACTGGGGATTATAAAGGGATTAGGTGGTCCTTCAATCCCAACATGATTCTGGTTAGAGATCCTCAAACAGAAATCCCACATGCTAGAGAAGTAAAGTTGGGTGAACTATTGAAGAGGAAAGCAGATGAAGGAGTAGCTGTGAGGATTATGATTTGGGATGATGAGACATCTTTGCCTTTTATTAAGATCAGAGGTGTTATGAATACTCATGATGAAGAAGCTTTTGCTTACTTCAAATACACAAAAGTAATATGCAGAAAGTGTCCAAGATTACACCATAAGTTCCCCACAGTCTTTACTCACCACCAGAAAACCATAACTGTGGACACCAGAGCACATGAAAACTCTGCTAATGAGAGAGAGATTATGAGCTTCTTGGGCGGTGTTGATCTGTGCGATGGCCGGTACGACACGGAGCAACACTCATTGTTCCAGACGCTTGCCAAGGAATCTCATTACCATGACTTCTACCAGACAAACATTGCAGGAGCTAGCCTCAACAAAGGAGGGCCAAGAGAGCCATGGCATGATGCTCATGCTTGTGTTACTGGTGAGGCTGCATGGGATGTTCTAACAAATTTTGAGCAAAGATGGACAAAGCAATGTGATCCCTCTCTTCTAGTCCCTGCCAACACCTTAGTAAAGCTCTATCCTTCTTTTGCATGCAATCCTTCAGAGAGAGATTGGAAAGTTCAGGTATACCGGTCGATCGATCATGTATCTGCCAGCCAAATGTTTAGAAAGCTTACTGTTGAGAGAAGCATACACGAGGCTTATGTGGAAGCGATTAGGCACGCCGATAAGTTCATATACATTGAGAACCAATATTTCATTGGAGGGTGCCATTTGTGGGAGAAAGACAGATACAGTGGCTGTGGAAATTTGATTCCAGTGGAGATTGCACTCAAGGTGGTTAGTAAGATCAAAGCAAAAGAGAGGTTTGCAGTGTACATAGTAATACCAATGTGGCCGGAAGGTGTTCCTGAAAGTGAACCAGTTCAAGATATACTGCATTGGACCAGAGAAACAATGGCAATGATGTATAGGCTAATTGGAGAAGCAATACAAGAAAGTGGTGAACCAGGGCACCCAAGAGACTACTTGAATTTCTTCTGCCTCGCAAATAGGGAGCAGAAGGGAGTAGATGAGTTTCTTCCACCACATTCTCCCCATCCTGAAACACAATACTGGAATGCACAGAAAAACAGAAGGTTCATGGTTTATGTCCACTCCAAGATCATGATAGTGGATGACCTATACATGTTAATAGGATCTGCCAATGTGAACCAAAGATCCATGGACGGGCGAAGGGACACAGAGATTGCCATAGGATGCTACCAGTCTCAACAAGATGGAGCTGAGTCTGACAAACTTATGAATCATGGTGGCATTCATGCTTACAGAATGTCACTGTGGTATGAACACACCCGAAGCACCGATGAACTGTTCTTGGAGCCGGAAAGGTTGGATTGCGTGCATGGAATGCGGTCAATAGGAGATAAAATGTGGCAAGTGTACAGGAATGAAGAGATTGTAGACATGGAAGGTGTGCACCTAGTAACCTACCCCATTAAAGTGACACAAGAAGGGTGTGTAGAGGACATGCCTAATGGTGGAGATTATTTTCCTGATACAAAATGTTTAGTGAAAGGAAAGAGATCTAAGTTACTACCCCCTCTATTTACCACTTAG 2127 0.4283 MAVMEEKHALLHGTIEATIFDATPYSPSFPFNCLFPNGKPAYVTIKIGNKVVAQTTQERGRVWNQTFQIQCAHPCDSTITITLKTSCSILGKFQIQAQQLKEGSLMNGFLPLLMENGKPSTQLKLRFILWFKPADLETSWAKIISTGDYKGIRWSFNPNMILVRDPQTEIPHAREVKLGELLKRKADEGVAVRIMIWDDETSLPFIKIRGVMNTHDEEAFAYFKYTKVICRKCPRLHHKFPTVFTHHQKTITVDTRAHENSANEREIMSFLGGVDLCDGRYDTEQHSLFQTLAKESHYHDFYQTNIAGASLNKGGPREPWHDAHACVTGEAAWDVLTNFEQRWTKQCDPSLLVPANTLVKLYPSFACNPSERDWKVQVYRSIDHVSASQMFRKLTVERSIHEAYVEAIRHADKFIYIENQYFIGGCHLWEKDRYSGCGNLIPVEIALKVVSKIKAKERFAVYIVIPMWPEGVPESEPVQDILHWTRETMAMMYRLIGEAIQESGEPGHPRDYLNFFCLANREQKGVDEFLPPHSPHPETQYWNAQKNRRFMVYVHSKIMIVDDLYMLIGSANVNQRSMDGRRDTEIAIGCYQSQQDGAESDKLMNHGGIHAYRMSLWYEHTRSTDELFLEPERLDCVHGMRSIGDKMWQVYRNEEIVDMEGVHLVTYPIKVTQEGCVEDMPNGGDYFPDTKCLVKGKRSKLLPPLFTT 708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211490g00025 708 Gene3D Endonuclease Chain A 363 604 - -
Stsc211490g00025 708 Pfam C2 domain 41 112 IPR000008 -
Stsc211490g00025 708 SMART pld_4 550 577 IPR001736 GO:0003824
Stsc211490g00025 708 SMART pld_4 242 280 IPR001736 GO:0003824
Stsc211490g00025 708 Gene3D Endonuclease Chain A 171 361 - -
Stsc211490g00025 708 PANTHER PHOSPHOLIPASE D 153 690 IPR015679 -
Stsc211490g00025 708 Pfam Phospholipase D C terminal 625 697 IPR024632 -
Stsc211490g00025 708 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 550 577 IPR001736 GO:0003824
Stsc211490g00025 708 Pfam PLD-like domain 543 588 IPR025202 -
Stsc211490g00025 708 SUPERFAMILY Phospholipase D/nuclease 155 379 - -
Stsc211490g00025 708 Pfam Phospholipase D Active site motif 242 280 IPR001736 GO:0003824
Stsc211490g00025 708 SUPERFAMILY Phospholipase D/nuclease 368 637 - -
Stsc211490g00025 708 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 41 129 IPR035892 -
Stsc211490g00025 708 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 242 280 IPR001736 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211490g00025 Stsc-Chr211490 135215 138447 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211490g00025 33 708 Phospholipase D Gene Family (Wang group) AT1G55180 57.105 0.0 853
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211490g00025 K01115 - gmx:100807431 1173.3