Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Stsc211490g00021 | ATGAGCCGTTACGACAGCCGCTCCGCCGACCCCGCTTCGTATCGTGACCGGAGAAGCGATTCGGGGCTAGGAGGGCCTCCAGCTTCAGCTTCAGCTTCCAGCAGAAGGGATTACGATGACGGTGGGGCCTCCCCAAGGAAGCTCAATTTGGACGGCTTGCCCCATTTCGAGAAGAATTTCTACCATGAATCGGCCACTGTTAGGGCAATGACTGAGTCCGAGGTTGACGAGTACCGCCTCCGCAGGGAAATCACCGTTGAAGGCCGTGACGTCCCCAAACCTGTCAAGTCCTTTCACGATGTTGGCTTTCCAGAATATGTACTGCAAGAGATTAAGAAAGCTGGCTTCGTCGAACCTACGCCCATTCAGTCTCAGGGTTGGCCTATGGCTTTGAAAGGGCGCGATCTGATCGGAATTGCGGAAACAGGGTCGGGGAAGACGCTTGCTTACTTGTTGCCTGCCATAGTTCATGTAAATGCTCAGCCAATTCTAGATCCTGGAGATGGACCAATTGTGTTAGTTTTGGCCCCAACTCGTGAACTTGCCGTCCAAATACAACAGGAGGCTACTAAATTTGGTGCGTCGTCAAGGATTAAGAGTACATGCATCTATGGTGGGGTTCCGAAGGGGCCTCAGGTGCGTGATCTCCAGAAAGGCGTTGAGATTGTAATTGCCACTCCGGGAAGGTTAATTGATATGATTGAGTCAAATCATACTAACTTGCGGAGGGTCACATACCTAGTATTGGACGAAGCTGATAGGATGTTGGACATGGGGTTTGATCCTCAGATAAGGAAGATTGTCTCACAGATTCGTCCAGACCGTCAGACTCTGTACTGGAGTGCTACCTGGCCTAAGGAGGTTGAACAATTGGCAAGGCAGTTCCTTTATAACCCATACAAAGTAATTATAGGTTCTCAAGATTTAAAAGCTAACCATGCTATACGACAATATGTTGACATTGTTCCCGAAAAGCAGAAATATGACAAATTGGTGAAGCTTCTGGAGGACATAATGGATGGCAGCCGAATATTGATATTCATGGATACCAAGAAGGGATGTGATCAGATCACTAGGCAGCTCCGCATGGATGGTTGGCCGGCACTATCAATTCATGGAGACAAAAGTCAAGCAGAAAGAGATTGGGTGCTCTCAGAGTTTAAATCTGGAAAGAGTCCAATAATGACTGCAACAGATGTTGCAGCTCGTGGTTTAGATGTGAAGGATGTGAAGTATGTGATAAATTATGACTTCCCGGGATCACTTGAAGATTATGTACATCGTATTGGTCGGACTGGGAGAGCTGGTGCAAAAGGAACTGCATACACGTTTTTCACAGCTGCTAATGCCAGATTTGCAAAGGAACTTATAACCATACTTGAGGAAGCTGGACAAAGAGTGAGCCCTGAATTGGCTGCAATGGGGCGTGGTGCACCTCCTCCGCCATCAGGTTTCCGAGACCGAGGGAAGGGCTATGGCAGTGGTCGCTCGTGGAGCTAA | 1500 | 0.4847 | MSRYDSRSADPASYRDRRSDSGLGGPPASASASSRRDYDDGGASPRKLNLDGLPHFEKNFYHESATVRAMTESEVDEYRLRREITVEGRDVPKPVKSFHDVGFPEYVLQEIKKAGFVEPTPIQSQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPILDPGDGPIVLVLAPTRELAVQIQQEATKFGASSRIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMIESNHTNLRRVTYLVLDEADRMLDMGFDPQIRKIVSQIRPDRQTLYWSATWPKEVEQLARQFLYNPYKVIIGSQDLKANHAIRQYVDIVPEKQKYDKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKSGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILEEAGQRVSPELAAMGRGAPPPPSGFRDRGKGYGSGRSWS | 499 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Stsc211490g00021 | 499 | Pfam | DEAD/DEAH box helicase | 120 | 291 | IPR011545 | GO:0003676|GO:0005524 | |
Stsc211490g00021 | 499 | MobiDBLite | consensus disorder prediction | 1 | 17 | - | - | |
Stsc211490g00021 | 499 | PANTHER | ATP-DEPENDENT RNA HELICASE DBP3 | 69 | 474 | - | - | |
Stsc211490g00021 | 499 | Gene3D | - | 58 | 306 | IPR027417 | - | |
Stsc211490g00021 | 499 | MobiDBLite | consensus disorder prediction | 472 | 499 | - | - | |
Stsc211490g00021 | 499 | CDD | SF2_C_DEAD | 315 | 445 | - | - | |
Stsc211490g00021 | 499 | ProSitePatterns | DEAD-box subfamily ATP-dependent helicases signature. | 248 | 256 | IPR000629 | - | |
Stsc211490g00021 | 499 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 168 | 452 | IPR027417 | - | |
Stsc211490g00021 | 499 | Gene3D | - | 308 | 473 | IPR027417 | - | |
Stsc211490g00021 | 499 | CDD | DEADc_DDX5_DDX17 | 107 | 302 | - | - | |
Stsc211490g00021 | 499 | FunFam | ATP-dependent RNA helicase RhlB | 306 | 478 | - | - | |
Stsc211490g00021 | 499 | SMART | helicmild6 | 355 | 436 | IPR001650 | - | |
Stsc211490g00021 | 499 | Pfam | Helicase conserved C-terminal domain | 327 | 436 | IPR001650 | - | |
Stsc211490g00021 | 499 | ProSiteProfiles | DEAD-box RNA helicase Q motif profile. | 96 | 124 | IPR014014 | GO:0003724 | |
Stsc211490g00021 | 499 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 127 | 302 | IPR014001 | - | |
Stsc211490g00021 | 499 | MobiDBLite | consensus disorder prediction | 1 | 50 | - | - | |
Stsc211490g00021 | 499 | FunFam | probable ATP-dependent RNA helicase DDX17 | 58 | 305 | - | - | |
Stsc211490g00021 | 499 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 330 | 475 | IPR001650 | - | |
Stsc211490g00021 | 499 | SMART | ultradead3 | 115 | 318 | IPR014001 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Stsc211490g00021 | Stsc-Chr211490 | 118369 | 122073 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Stsc211490g00021 | 83 | 456 | Eukaryotic Initiation Factors Gene Family | AT3G19760 | 34.933 | 1.19e-78 | 250 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Stsc211490g00021 | K12823 | - | gmx:100781619 | 902.894 |