Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211490g00021 ATGAGCCGTTACGACAGCCGCTCCGCCGACCCCGCTTCGTATCGTGACCGGAGAAGCGATTCGGGGCTAGGAGGGCCTCCAGCTTCAGCTTCAGCTTCCAGCAGAAGGGATTACGATGACGGTGGGGCCTCCCCAAGGAAGCTCAATTTGGACGGCTTGCCCCATTTCGAGAAGAATTTCTACCATGAATCGGCCACTGTTAGGGCAATGACTGAGTCCGAGGTTGACGAGTACCGCCTCCGCAGGGAAATCACCGTTGAAGGCCGTGACGTCCCCAAACCTGTCAAGTCCTTTCACGATGTTGGCTTTCCAGAATATGTACTGCAAGAGATTAAGAAAGCTGGCTTCGTCGAACCTACGCCCATTCAGTCTCAGGGTTGGCCTATGGCTTTGAAAGGGCGCGATCTGATCGGAATTGCGGAAACAGGGTCGGGGAAGACGCTTGCTTACTTGTTGCCTGCCATAGTTCATGTAAATGCTCAGCCAATTCTAGATCCTGGAGATGGACCAATTGTGTTAGTTTTGGCCCCAACTCGTGAACTTGCCGTCCAAATACAACAGGAGGCTACTAAATTTGGTGCGTCGTCAAGGATTAAGAGTACATGCATCTATGGTGGGGTTCCGAAGGGGCCTCAGGTGCGTGATCTCCAGAAAGGCGTTGAGATTGTAATTGCCACTCCGGGAAGGTTAATTGATATGATTGAGTCAAATCATACTAACTTGCGGAGGGTCACATACCTAGTATTGGACGAAGCTGATAGGATGTTGGACATGGGGTTTGATCCTCAGATAAGGAAGATTGTCTCACAGATTCGTCCAGACCGTCAGACTCTGTACTGGAGTGCTACCTGGCCTAAGGAGGTTGAACAATTGGCAAGGCAGTTCCTTTATAACCCATACAAAGTAATTATAGGTTCTCAAGATTTAAAAGCTAACCATGCTATACGACAATATGTTGACATTGTTCCCGAAAAGCAGAAATATGACAAATTGGTGAAGCTTCTGGAGGACATAATGGATGGCAGCCGAATATTGATATTCATGGATACCAAGAAGGGATGTGATCAGATCACTAGGCAGCTCCGCATGGATGGTTGGCCGGCACTATCAATTCATGGAGACAAAAGTCAAGCAGAAAGAGATTGGGTGCTCTCAGAGTTTAAATCTGGAAAGAGTCCAATAATGACTGCAACAGATGTTGCAGCTCGTGGTTTAGATGTGAAGGATGTGAAGTATGTGATAAATTATGACTTCCCGGGATCACTTGAAGATTATGTACATCGTATTGGTCGGACTGGGAGAGCTGGTGCAAAAGGAACTGCATACACGTTTTTCACAGCTGCTAATGCCAGATTTGCAAAGGAACTTATAACCATACTTGAGGAAGCTGGACAAAGAGTGAGCCCTGAATTGGCTGCAATGGGGCGTGGTGCACCTCCTCCGCCATCAGGTTTCCGAGACCGAGGGAAGGGCTATGGCAGTGGTCGCTCGTGGAGCTAA 1500 0.4847 MSRYDSRSADPASYRDRRSDSGLGGPPASASASSRRDYDDGGASPRKLNLDGLPHFEKNFYHESATVRAMTESEVDEYRLRREITVEGRDVPKPVKSFHDVGFPEYVLQEIKKAGFVEPTPIQSQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPILDPGDGPIVLVLAPTRELAVQIQQEATKFGASSRIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMIESNHTNLRRVTYLVLDEADRMLDMGFDPQIRKIVSQIRPDRQTLYWSATWPKEVEQLARQFLYNPYKVIIGSQDLKANHAIRQYVDIVPEKQKYDKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKSGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILEEAGQRVSPELAAMGRGAPPPPSGFRDRGKGYGSGRSWS 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211490g00021 499 Pfam DEAD/DEAH box helicase 120 291 IPR011545 GO:0003676|GO:0005524
Stsc211490g00021 499 MobiDBLite consensus disorder prediction 1 17 - -
Stsc211490g00021 499 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 69 474 - -
Stsc211490g00021 499 Gene3D - 58 306 IPR027417 -
Stsc211490g00021 499 MobiDBLite consensus disorder prediction 472 499 - -
Stsc211490g00021 499 CDD SF2_C_DEAD 315 445 - -
Stsc211490g00021 499 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 248 256 IPR000629 -
Stsc211490g00021 499 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 168 452 IPR027417 -
Stsc211490g00021 499 Gene3D - 308 473 IPR027417 -
Stsc211490g00021 499 CDD DEADc_DDX5_DDX17 107 302 - -
Stsc211490g00021 499 FunFam ATP-dependent RNA helicase RhlB 306 478 - -
Stsc211490g00021 499 SMART helicmild6 355 436 IPR001650 -
Stsc211490g00021 499 Pfam Helicase conserved C-terminal domain 327 436 IPR001650 -
Stsc211490g00021 499 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 96 124 IPR014014 GO:0003724
Stsc211490g00021 499 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 127 302 IPR014001 -
Stsc211490g00021 499 MobiDBLite consensus disorder prediction 1 50 - -
Stsc211490g00021 499 FunFam probable ATP-dependent RNA helicase DDX17 58 305 - -
Stsc211490g00021 499 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 330 475 IPR001650 -
Stsc211490g00021 499 SMART ultradead3 115 318 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211490g00021 Stsc-Chr211490 118369 122073 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211490g00021 83 456 Eukaryotic Initiation Factors Gene Family AT3G19760 34.933 1.19e-78 250
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211490g00021 K12823 - gmx:100781619 902.894