Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211490g00007 ATGTCTGGCCATGAAGCAGCCACCACTTCCTCCGCCACCAATTACTTCACTCCACCACCACCACAACCACCAGCAAGTCAAGTTAATAAGAAGAAGAGAAGCCTCCCTGGTAACCCAGATCCTGATGCTGAAGTAATAGCGTTGTCACCAAAGACTCTGATGGCCACAAACAGATTCCTATGTGAGATCTGTGGGAAGGGGTTTCAGAGGGACCAGAATCTGCAGCTACACAGAAGAGGGCACAACTTGCCGTGGAAGCTGAAGCAGAGAGCGAAGACGGAGGTGGTGAGGAAGAAAGTGTACGTATGCCCGGAGGCAACTTGCGTGCACCACGATCCCGCGAGAGCACTGGGGGACCTCACGGGGATCAAGAAGCACTTCAGCAGAAAGCACGGCGAGAAGAAGTGGAAATGCGAAAAGTGCTCAAAGAAGTATGCCGTTCAATCCGATTGGAAAGCCCACTCCAAAACCTGCGGCACTCGCGAGTACCGATGCGACTGCGGTACCCTCTTCTCAAGGAGGGACAGTTTTATAACGCACAGAGCTTTTTGTGATGCGCTTGCAGAAGAAAGTGCGAGAGGTGTGACAGCTGTAGCACCGTCTTCTCAATCTCATGAAATCCATGGATTCCAATTGAAACAAGAGCAGCAGCAGCAGCAAACGAGTTTCAGCAGCATGCCAGCGTGGCTTGGAAGTTCAATCTCCACCGTTGATTTCTCGGGGGGAGGAGTAGATGTAGATCACCCAAATCGAAACCCTAACCCTAGCGTTACTGCTCCAACACTTGCCGCACCTTCACCGCACATGTCAGCCACTGCGCTGCTGCAGAAAGCAGCGCAGATGGGAGCAACCACCAGCACTACCACCAGCAGGTCCCACCAGCAGCAGCAAGGTCAGGGTCACGTGTCTGATTCCATTGCTGCGAATTCCAACAGCAACAGTGGAAGTACTTTTGGTTTGAATTTGTCGTCACGTGATGACCCTACGACTACGACTACTACTGCTGCTCCTGCTGCCATGGCTTTTGGCCACCACCACGGGTTCTTCCCGGCTCCTCCCGGAGGTTCTGCTTCTGCGTCTCTACTCCAGCACGTGATGAACTCTTTTGAAGTAGGTCCCACTTTTGAGGAAGCTTTCTCCGTCGGTGGGATTCCGATTCCCAACGCAAAGAAAGATCATCATCTTCAGCACGATGAGGGATTGACGAGGGATTTCTTGGGGCTTAGGCCTCTTTCTCATAGCGATATCCTCACCATTGCTGGTATGGCTGCTGCTTCTTCTTCTTCTTCCTCTCATGATCATCATCATCTCCAAAAGCCATGGCAAGGTTAG 1332 0.5203 MSGHEAATTSSATNYFTPPPPQPPASQVNKKKRSLPGNPDPDAEVIALSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRAKTEVVRKKVYVCPEATCVHHDPARALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAEESARGVTAVAPSSQSHEIHGFQLKQEQQQQQTSFSSMPAWLGSSISTVDFSGGGVDVDHPNRNPNPSVTAPTLAAPSPHMSATALLQKAAQMGATTSTTTSRSHQQQQGQGHVSDSIAANSNSNSGSTFGLNLSSRDDPTTTTTTAAPAAMAFGHHHGFFPAPPGGSASASLLQHVMNSFEVGPTFEEAFSVGGIPIPNAKKDHHLQHDEGLTRDFLGLRPLSHSDILTIAGMAAASSSSSSHDHHHLQKPWQG 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211490g00007 443 MobiDBLite consensus disorder prediction 1 42 - -
Stsc211490g00007 443 MobiDBLite consensus disorder prediction 1 15 - -
Stsc211490g00007 443 MobiDBLite consensus disorder prediction 277 332 - -
Stsc211490g00007 443 FunFam protein indeterminate-domain 12-like 38 107 - -
Stsc211490g00007 443 SUPERFAMILY beta-beta-alpha zinc fingers 58 156 IPR036236 -
Stsc211490g00007 443 SMART c2h2final6 136 156 IPR013087 -
Stsc211490g00007 443 SMART c2h2final6 101 131 IPR013087 -
Stsc211490g00007 443 SMART c2h2final6 59 81 IPR013087 -
Stsc211490g00007 443 ProSiteProfiles Zinc finger C2H2 type domain profile. 59 81 IPR013087 -
Stsc211490g00007 443 MobiDBLite consensus disorder prediction 240 332 - -
Stsc211490g00007 443 ProSitePatterns Zinc finger C2H2 type domain signature. 61 81 IPR013087 -
Stsc211490g00007 443 FunFam protein indeterminate-domain 5, chloroplastic-like 114 193 - -
Stsc211490g00007 443 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 18 423 IPR031140 -
Stsc211490g00007 443 Gene3D Classic Zinc Finger 55 82 - -
Stsc211490g00007 443 Gene3D Classic Zinc Finger 115 193 - -
Stsc211490g00007 443 MobiDBLite consensus disorder prediction 251 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211490g00007 Stsc-Chr211490 38912 40916 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211490g00007 30 420 IDZ Gene Family AT1G55110 50.358 3.04e-121 359
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc211490g00007 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211490g00007 K25870 - gmx:100808344 444.506