Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Stsc211490g00007 | ATGTCTGGCCATGAAGCAGCCACCACTTCCTCCGCCACCAATTACTTCACTCCACCACCACCACAACCACCAGCAAGTCAAGTTAATAAGAAGAAGAGAAGCCTCCCTGGTAACCCAGATCCTGATGCTGAAGTAATAGCGTTGTCACCAAAGACTCTGATGGCCACAAACAGATTCCTATGTGAGATCTGTGGGAAGGGGTTTCAGAGGGACCAGAATCTGCAGCTACACAGAAGAGGGCACAACTTGCCGTGGAAGCTGAAGCAGAGAGCGAAGACGGAGGTGGTGAGGAAGAAAGTGTACGTATGCCCGGAGGCAACTTGCGTGCACCACGATCCCGCGAGAGCACTGGGGGACCTCACGGGGATCAAGAAGCACTTCAGCAGAAAGCACGGCGAGAAGAAGTGGAAATGCGAAAAGTGCTCAAAGAAGTATGCCGTTCAATCCGATTGGAAAGCCCACTCCAAAACCTGCGGCACTCGCGAGTACCGATGCGACTGCGGTACCCTCTTCTCAAGGAGGGACAGTTTTATAACGCACAGAGCTTTTTGTGATGCGCTTGCAGAAGAAAGTGCGAGAGGTGTGACAGCTGTAGCACCGTCTTCTCAATCTCATGAAATCCATGGATTCCAATTGAAACAAGAGCAGCAGCAGCAGCAAACGAGTTTCAGCAGCATGCCAGCGTGGCTTGGAAGTTCAATCTCCACCGTTGATTTCTCGGGGGGAGGAGTAGATGTAGATCACCCAAATCGAAACCCTAACCCTAGCGTTACTGCTCCAACACTTGCCGCACCTTCACCGCACATGTCAGCCACTGCGCTGCTGCAGAAAGCAGCGCAGATGGGAGCAACCACCAGCACTACCACCAGCAGGTCCCACCAGCAGCAGCAAGGTCAGGGTCACGTGTCTGATTCCATTGCTGCGAATTCCAACAGCAACAGTGGAAGTACTTTTGGTTTGAATTTGTCGTCACGTGATGACCCTACGACTACGACTACTACTGCTGCTCCTGCTGCCATGGCTTTTGGCCACCACCACGGGTTCTTCCCGGCTCCTCCCGGAGGTTCTGCTTCTGCGTCTCTACTCCAGCACGTGATGAACTCTTTTGAAGTAGGTCCCACTTTTGAGGAAGCTTTCTCCGTCGGTGGGATTCCGATTCCCAACGCAAAGAAAGATCATCATCTTCAGCACGATGAGGGATTGACGAGGGATTTCTTGGGGCTTAGGCCTCTTTCTCATAGCGATATCCTCACCATTGCTGGTATGGCTGCTGCTTCTTCTTCTTCTTCCTCTCATGATCATCATCATCTCCAAAAGCCATGGCAAGGTTAG | 1332 | 0.5203 | MSGHEAATTSSATNYFTPPPPQPPASQVNKKKRSLPGNPDPDAEVIALSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRAKTEVVRKKVYVCPEATCVHHDPARALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAEESARGVTAVAPSSQSHEIHGFQLKQEQQQQQTSFSSMPAWLGSSISTVDFSGGGVDVDHPNRNPNPSVTAPTLAAPSPHMSATALLQKAAQMGATTSTTTSRSHQQQQGQGHVSDSIAANSNSNSGSTFGLNLSSRDDPTTTTTTAAPAAMAFGHHHGFFPAPPGGSASASLLQHVMNSFEVGPTFEEAFSVGGIPIPNAKKDHHLQHDEGLTRDFLGLRPLSHSDILTIAGMAAASSSSSSHDHHHLQKPWQG | 443 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Stsc211490g00007 | 443 | MobiDBLite | consensus disorder prediction | 1 | 42 | - | - | |
Stsc211490g00007 | 443 | MobiDBLite | consensus disorder prediction | 1 | 15 | - | - | |
Stsc211490g00007 | 443 | MobiDBLite | consensus disorder prediction | 277 | 332 | - | - | |
Stsc211490g00007 | 443 | FunFam | protein indeterminate-domain 12-like | 38 | 107 | - | - | |
Stsc211490g00007 | 443 | SUPERFAMILY | beta-beta-alpha zinc fingers | 58 | 156 | IPR036236 | - | |
Stsc211490g00007 | 443 | SMART | c2h2final6 | 136 | 156 | IPR013087 | - | |
Stsc211490g00007 | 443 | SMART | c2h2final6 | 101 | 131 | IPR013087 | - | |
Stsc211490g00007 | 443 | SMART | c2h2final6 | 59 | 81 | IPR013087 | - | |
Stsc211490g00007 | 443 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 59 | 81 | IPR013087 | - | |
Stsc211490g00007 | 443 | MobiDBLite | consensus disorder prediction | 240 | 332 | - | - | |
Stsc211490g00007 | 443 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 61 | 81 | IPR013087 | - | |
Stsc211490g00007 | 443 | FunFam | protein indeterminate-domain 5, chloroplastic-like | 114 | 193 | - | - | |
Stsc211490g00007 | 443 | PANTHER | SERINE/THREONINE-PROTEIN KINASE RIO | 18 | 423 | IPR031140 | - | |
Stsc211490g00007 | 443 | Gene3D | Classic Zinc Finger | 55 | 82 | - | - | |
Stsc211490g00007 | 443 | Gene3D | Classic Zinc Finger | 115 | 193 | - | - | |
Stsc211490g00007 | 443 | MobiDBLite | consensus disorder prediction | 251 | 265 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Stsc211490g00007 | Stsc-Chr211490 | 38912 | 40916 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Stsc211490g00007 | 30 | 420 | IDZ Gene Family | AT1G55110 | 50.358 | 3.04e-121 | 359 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2H2 | Stsc211490g00007 | None | None | None |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Stsc211490g00007 | K25870 | - | gmx:100808344 | 444.506 |