Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211489g00046 ATGGAGGAAATATCTTCTAGTGTTGCAGTGCCATTTACAATTGGGAACTTGATTCAAAAGGAGTCAGCGGTGGCAACCCACGTGGAGATAACCGGGATAAAGCTTATGGCAAATACAGCTGCAGCTTTCATATTAAATCCTTCAGTGGAAGGTTGCCAACCATACTCTGTTGGAAGTGATAATCATTCTGATGTTAGTCTCAAACATCAGATTAAGGTATCTGCAGAGATGAAAGAGAACGAAGATCGAGCTGCTGTTGTCTCAGAAATGGTTATTGAATGTGACAGCAATTGGGTCTTGAGAGAAAGCTATAACCCAGCAAGGAAGGAAGATGAATTCATGCTGGCTGTGGATTTTCAATGTCTACATAGTTCAAGCTCCAATGACAAACGCAGCCCCTCTGGGGAGGAAGCTGCATCCTTGAAGGCCATCTATTCAGAGATAGATTCACCAGTTATCATTGGGGTTGATGATAAAATCTATGGTGAGTGTGGATTAAACGAGTCACATCCAGCACTGCAGCCAGAGGAGAACACAGTTTCTGTTGCAATGGATCTTGAGAGTGAGGATCCAAAGCTTTTTGCTGCACCTCTTGACCAGTTGAACAGAACAAGCAACCAGAATGCTTCGGAAGTGAGTAGTCGTCTTCTCTGTGGCTTTTCATCAATCTGTGGGAAAAGATCGGAGATGGAAGATGCTATAGCTGTTAAGCCTAAACTTATTCAAGTCCCTTCACAGATGCTAACAGATAGCCATGTAAACGGAAACACAATATCCTCATTAGCCCACTTTTTTGGTGTCTATGATGGACATGGAGGCTTTCAGGTTGCCAATTACTGCCGGGAACGCCTGCATTCAGCTTTGATTGAGGAGATAGAAGCTGCAAAATCAAGTTTAGCAGAAACAGATGGGGGAGATTATTCGCAGGACCATTGGAAGAAAGCATTTGTAAGTTGTTTTCAGAAAGTAGATGATGAAGTTGGAGGAATTCGAGCTGGTAATGGCAGAAATAACAGTGGTGGACCTGAGTCTACAATTGAACCAATTGCTCCCGAGACCGCTGGCTCCACTGCAGTGGTTGCTGTTTTAAGTCAATCACACATAATAGTTGCAAATTGTGGGGATTCAAGAGCCGTCTTGTTTCGTGGAAAAGAAGCCATCCCATTGTCTGCTGACCACAAACCAAACAGAGAGGATGAGTGGGCAAGGATAGAAGCTGCAGGAGGAAGGGTCATACATTGGCAAGGGTACCGAGTTCTTGGTGTTTTGGCAATGTCAAGATCCATAGGGGATAGGTACTTGAAACCATGTATTATACCAGAACCAGAAGTGAAGTTTGTGCAACGAGAGAAACATGACGAGTGCCTTATTCTAGCTAGTGATGGTTTATGGGATGTGGTGACAAACGAAGAAGCCTGTGAAGTTGCACGGAAGAGAATCCTTCTTTGGCACAAGAAATACGGCGAGAGTGCAGCGATGACCGAACAAGTTGAAGAAGGAGTTGACCCTGCAGCTCACTCTGCTGCAGAGTATCTATCANNNNNNNNNNAGATAACATCTCTGTAA 1566 0.4387 MEEISSSVAVPFTIGNLIQKESAVATHVEITGIKLMANTAAAFILNPSVEGCQPYSVGSDNHSDVSLKHQIKVSAEMKENEDRAAVVSEMVIECDSNWVLRESYNPARKEDEFMLAVDFQCLHSSSSNDKRSPSGEEAASLKAIYSEIDSPVIIGVDDKIYGECGLNESHPALQPEENTVSVAMDLESEDPKLFAAPLDQLNRTSNQNASEVSSRLLCGFSSICGKRSEMEDAIAVKPKLIQVPSQMLTDSHVNGNTISSLAHFFGVYDGHGGFQVANYCRERLHSALIEEIEAAKSSLAETDGGDYSQDHWKKAFVSCFQKVDDEVGGIRAGNGRNNSGGPESTIEPIAPETAGSTAVVAVLSQSHIIVANCGDSRAVLFRGKEAIPLSADHKPNREDEWARIEAAGGRVIHWQGYRVLGVLAMSRSIGDRYLKPCIIPEPEVKFVQREKHDECLILASDGLWDVVTNEEACEVARKRILLWHKKYGESAAMTEQVEEGVDPAAHSAAEYLSXXXXITSL 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211489g00046 521 ProSiteProfiles PPM-type phosphatase domain profile. 217 521 IPR001932 -
Stsc211489g00046 521 SMART PP2C_4 207 519 IPR001932 -
Stsc211489g00046 521 CDD PP2Cc 218 480 IPR001932 -
Stsc211489g00046 521 FunFam Protein phosphatase 2C 50 216 517 - -
Stsc211489g00046 521 SUPERFAMILY PP2C-like 206 481 IPR036457 -
Stsc211489g00046 521 MobiDBLite consensus disorder prediction 330 349 - -
Stsc211489g00046 521 Gene3D - 205 517 IPR036457 -
Stsc211489g00046 521 ProSitePatterns PPM-type phosphatase domain signature. 264 272 IPR000222 GO:0043169
Stsc211489g00046 521 PANTHER PROTEIN PHOSPHATASE 181 480 IPR015655 GO:0004722|GO:0006470
Stsc211489g00046 521 Pfam Protein phosphatase 2C 218 503 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211489g00046 Stsc-Chr211489 172177 175459 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211489g00046 201 513 PP2C-type Phosphatase Gene Family AT4G26080 58.675 1.86e-119 357
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211489g00046 K14497 - gmx:100802159 656.751