Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211489g00045 ATGAAGAAAGGACTTCTGGGCCCCAGTCTCAAGCTCTCTGTCCCTGCCTCATCCGATCAAGCTTCTTTTTCCAAGTTCTTGACTGAAAGTGGAACCTTTAAGGATGGGGATCTGCTTGTCAACAGGGATGGAGTTAGAATTGTTTCTGCAAGTGAAGTGGAACCTCCACCCCCAAACCCAATCAAGCCGATAGACAACCAGCTAAGTTTGGCAGATATAGACACAATCAAAGTGGTCGGAAAAGGAACGGGAGGGGTTGTGCAATTGGTGCAACATAAATGGACTAGTCAGTTTTTTGCATTAAAGGAAATTCAAATGAACATCGAGGAGTCTATGCGAAAGCAGATAGCACAAGAGCTGAAAATTAATCAATCAGCACAATGTCCTTTTGTTGTTGTCTGCTACCAGTCATTCTATGTCAATGGTGTTATATCAATCATCTTAGAGTACATGGACGGAGGGTCCTTAGCGGATCTTCTGAAGAAAGTCAAAACAATTCCAGAGCCTTATCTTGCAGCCATCTGTAAACAGGTTCTGAAGGGATTAATGTATCTTCACCATGAAAAACATATTATCCACCGAGACTTGAAACCTTCTAATTTGTTGATAAATCATAGAGGTGAAGTAAAGATTACTGATTTTGGTGTGAGTGCAATTATGGAAAGTACATCTGGTCAAGCAAATACTTTCATCGGCACATTCAACTATATGTCTCCGGAGAGGATCAATGGTAGCCAGCGTGGCTATAACTACAAAAGCGATATATGGAGCTTGGGATTAATATTGCTCGAGTGTGCTATGGGGAGATTTCCATACACACCACCAGATCAAAGTGAGAGATGGGAAAGTATTTTTGACCTTATTGAAACCATTGTAGATAAACCTCCTCCTACTGCTCCATCAGAACACTTTTCTACAGAATTTTGCTCATTTATATCAGCATGCTTACAGAAAGACCCGAAGGATAGACTATCAGCTCAGGAACTTATGGGACATCCTTTTGTCAGCATGTACGATGACTTGCATGTAGATCTTGCAGCATACTTCTCAAATGCAGGATCTCCACTTGCAACCTTATAA 1080 0.413 MKKGLLGPSLKLSVPASSDQASFSKFLTESGTFKDGDLLVNRDGVRIVSASEVEPPPPNPIKPIDNQLSLADIDTIKVVGKGTGGVVQLVQHKWTSQFFALKEIQMNIEESMRKQIAQELKINQSAQCPFVVVCYQSFYVNGVISIILEYMDGGSLADLLKKVKTIPEPYLAAICKQVLKGLMYLHHEKHIIHRDLKPSNLLINHRGEVKITDFGVSAIMESTSGQANTFIGTFNYMSPERINGSQRGYNYKSDIWSLGLILLECAMGRFPYTPPDQSERWESIFDLIETIVDKPPPTAPSEHFSTEFCSFISACLQKDPKDRLSAQELMGHPFVSMYDDLHVDLAAYFSNAGSPLATL 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211489g00045 359 FunFam Mitogen-activated protein kinase kinase 6 154 354 - -
Stsc211489g00045 359 Pfam Protein kinase domain 75 335 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211489g00045 359 ProSiteProfiles Protein kinase domain profile. 73 335 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211489g00045 359 SMART serkin_6 73 335 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211489g00045 359 Gene3D Phosphorylase Kinase; domain 1 60 152 - -
Stsc211489g00045 359 FunFam Mitogen-activated protein kinase kinase 6 41 152 - -
Stsc211489g00045 359 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 11 338 - -
Stsc211489g00045 359 SUPERFAMILY Protein kinase-like (PK-like) 70 343 IPR011009 -
Stsc211489g00045 359 CDD PKc_MAPKK_plant_like 88 339 - -
Stsc211489g00045 359 Gene3D Transferase(Phosphotransferase) domain 1 153 355 - -
Stsc211489g00045 359 ProSitePatterns Serine/Threonine protein kinases active-site signature. 191 203 IPR008271 GO:0004672|GO:0006468
Stsc211489g00045 359 ProSitePatterns Protein kinases ATP-binding region signature. 79 102 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211489g00045 Stsc-Chr211489 168116 171979 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211489g00045 1 330 MAP Kinase Kinase Gene Family AT4G29810 66.962 2.80e-168 471
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE7 Stsc211489g00045 Pkinase 3e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211489g00045 K20603 - gmx:100789734 619.387