Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211489g00039 ATGGGTGGGTGTATGGAGATTGATGCACGTGTGGGTGACACTGGGAGAACCGAAGGCCATGTGTTACTCTCTGCAGCAGTGAACATTATTGTTGGTTCTCATGTCTGGATTGAAGATCCAGTGCAAGCCTGGATTGGTGGAGAAGTTTCTAAAATCAATGGAGAAGAAGTTCATGTTCGCACTGCAGAGGGGAAAACAGTTGTAAAAAATATCTCAAAGGTTTTTCCCAAGGATAATGAAGCACCTCCCGGGGGTGTAGATGATATGACCAAACTGTCATACTTGCATGAACCAGGAGTTCTGCACAACTTGGCGACTAGATATGAACTCAACGAGATTTATACATATACTGGAAATATTCTGATTGCAATAAACCCATTCCAAAGGTTGCCTCATCTATATGATACTCATATGATGGAACAATACAAAGGAGCTGTATTTGGCGAGCTGAGTCCCCATGTTTTCGCAGTTGCTGATGTTGCATACAGGGCAATGATCAATGAAGGGAAAAGCAACTCAATCCTGGTTAGTGGAGAGAGTGGGGCTGGTAAGACAGAGACAACAAAGATGCTCATGCGATATCTTGCATACCTTGGAGGTCGATCTGGGGTAGAAGGGCGAACAGTTGAACAACAAGTTCTAGAATCCAATCCAGTTCTAGAAGCATTTGGGAATGCCAAAACAGTCAGAAACAATAATTCAAGTCGTTTTGGTAAATTTGTTGAGATACAATTTGACAACAAGGGAAGGATATCTGGAGCTGCTATACGGACTTATTTGCTTGAGAGGTCAAGAGTATGTCAGATTTCAGATCCGGAAAGAAATTACCATTGTTTTTACCTTCTTTGTGCAGCGCCAGCTGAGGAAAAAGAGAATGAGGAGGAGCAGGAGGCAATATTTAGGGTTGTCGCAGCAGTCTTGCACCTTGGGAATATTGAATTTGCAAAAGGAGAGGAGATCGACTCTTCTGTTATCAAGGATGAGAAATCTAGGTTCCATCTTAATACAACTGCGGAACTTCTCAAGTGTGATGCTAAGAGCTTGGAAGATGCACTGATCCAGCGTGTGATGGTAACACCTGAGGAGGTCATTACAAGAACCCTTGATCCTGTTGCAGCTGTTGGTAGCAGGGATGCATTAGCCAAAACTATTTACTCACGCTTGTTTGATTGGTAA 1176 0.4303 MGGCMEIDARVGDTGRTEGHVLLSAAVNIIVGSHVWIEDPVQAWIGGEVSKINGEEVHVRTAEGKTVVKNISKVFPKDNEAPPGGVDDMTKLSYLHEPGVLHNLATRYELNEIYTYTGNILIAINPFQRLPHLYDTHMMEQYKGAVFGELSPHVFAVADVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDNKGRISGAAIRTYLLERSRVCQISDPERNYHCFYLLCAAPAEEKENEEEQEAIFRVVAAVLHLGNIEFAKGEEIDSSVIKDEKSRFHLNTTAELLKCDAKSLEDALIQRVMVTPEEVITRTLDPVAAVGSRDALAKTIYSRLFDW 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211489g00039 391 PANTHER MYOSIN 80 290 - -
Stsc211489g00039 391 PRINTS Myosin heavy chain signature 171 196 IPR001609 GO:0003774|GO:0005524|GO:0016459
Stsc211489g00039 391 PRINTS Myosin heavy chain signature 114 133 IPR001609 GO:0003774|GO:0005524|GO:0016459
Stsc211489g00039 391 PRINTS Myosin heavy chain signature 218 245 IPR001609 GO:0003774|GO:0005524|GO:0016459
Stsc211489g00039 391 Gene3D Kinesin motor domain 34 317 IPR036961 -
Stsc211489g00039 391 ProSiteProfiles Myosin motor domain profile. 84 391 IPR001609 GO:0003774|GO:0005524|GO:0016459
Stsc211489g00039 391 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 55 391 IPR027417 -
Stsc211489g00039 391 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 30 79 IPR004009 GO:0003774|GO:0005524|GO:0016459
Stsc211489g00039 391 SMART MYSc_2a 78 391 IPR001609 GO:0003774|GO:0005524|GO:0016459
Stsc211489g00039 391 Pfam Myosin head (motor domain) 86 291 IPR001609 GO:0003774|GO:0005524|GO:0016459
Stsc211489g00039 391 Pfam Myosin head (motor domain) 292 391 IPR001609 GO:0003774|GO:0005524|GO:0016459
Stsc211489g00039 391 Pfam Myosin N-terminal SH3-like domain 31 68 IPR004009 GO:0003774|GO:0005524|GO:0016459
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211489g00039 Stsc-Chr211489 146575 153486 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211489g00039 23 391 Myosins gene family AT1G54560 73.966 0.0 627
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211489g00039 K10357 - gmx:100777802 679.093