Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211489g00038 ATGGAGCAAGAAGAATACACCAAGGAAGAGATTGATTGGAGTTACATAGAATTTGTTGACAACCAAGATGTTCTGGATTTAATTGAAAAGAAACCTGGAGGAATAATTGCACTTCTTGATGAAGCCTGTATGTTTCCTAAGTCTACACATGAAACATTTGCTCAGAAGCTGTACCAGACATTCAAAAACAACAAGCGGTTTATCAAACCTAAACTTTCTCGGACTAGTTTTACCATATCTCACTACGCAGGGGAGGTGACATATCTGGCTGATATGTTTCTTGACAAAAACAAGGATTATGTGGTCGCAGAACATCAGGATCTGTTGACAGCCTCAAAATGTATATTTGTGGCTGGTCTATTTCCCCCTTCCCCGCAGGAGTCTTCAAAATCATCAAAGTTCTCTTCAATTGGATCTCGCTTCAAGGGTGTTCTTGAGGCAATTAGAATCAGCTGTGCTGGATATCCTACAAGACGGACTTTTTATGAGTTTCTTAACCGATTTGGTGTTCTTGCCCCTGAAGTTCTGGATGGAAATTATGATGACAAGGTTGCTTGCCAAAGGATACTGGATAAGATGGGTATGAAAGGCTATCAGATAGGCAAAACAAAGGTTTTCCTAAGAGCCGGTCAAATGGCTGAGTTGGATGCAAGAAGAGCAGAGGTTCTTGGGAATGCAGCTAGAGTCATTCAGAGGCAAATACGCACACATATTGCACGCAAGGAATTCAAAGAGTTGCGTCAAGCTGCAGTCTGTTTGCAATCTAATTTACGAGGAATATTGGCCCGGAAGCTCTATGAGAAGTTGCGGCGTGAAGCAGCAGCTCTGAAAATAGAAAAGAACTTCAAAGGATATGTTGCTAGGAGATCTTTCTTAGGTATACGATCATCTGCAATTATAATACAGACAGGTTTAAGGGCTATGAAGGCTCGTGATGAATTTAGATTTAGAAAGCAAACAAAGGCTGCAATTCATATCCAGGCTAATTTGCGACGGCAAATTGCATTTTCATATTATAAAAAGTTGCAAAAGGCTGCAATTGTTACTCAGTGTGGCTGGAGGAGAAGGATCGCTAGAAGGGAACTTAGAATGCTCAAAATGGCTGCAAGAGAAACTGGGGCCCTTAAGGAAGCAAAGGACAAACTAGAAAAGCGTGTAGAAGAACTTACATGGCGTTTGCAAATTGAGAAGCGTTTGAGGACTGATCTGGAAGAGGAAAAGACACAAGAAATTGCCAAGTTACAGGATGCTTTGCATGCAATGCAAATACAGTTAGATGAAGCAAATGCTAGAGCAGTTAAAGAGCGTGAGGCAGCACGTAAAGCCATTGAAGAAGCACCACCAGTTATTAAGGAGACTCCTGTTCTAATTCAAGACACTGAAAAGATTAATTCTTTAACGTCCGAAGTAAATAGTTTGAAGGAATCACTATTATTGGAAATACGAGCTAAGGAAGAGGCCAGGAAATCTCAGGCTGAGGCTGAAGCCAGAAATGAGGAGCTAGTTAAAAAGGTTGAAGATTCTGACCGTAAAGTGGAACAACTCCAGGAATTGGTTCAGAGATTGGAAGAAAAAATTTCCAATTCAGAGTCAGAAAACCAAGTTCTTCGCCAGCAAGCATTGGCTGTATCACCGACTGGAAAAGCTTTGACTGCAAGACCAAGGACAACGATAATTCAGAGGATACCAGAAAATGGGAATACTCCAAAGGAGGATGCAAAAATTGGATCAGATATGGTTCTTGCTGTATCAAATGTACGTGAGCCTGAATCTGAGGGAAAACCGCAAAAGTCTCTCAATGAGAAGCAGCAGGAAAATCAGGATTTACTAATCAAGTGCATATCAAAAGATTTGGGATTTTCTGGGGGCAAACCTGTTGCTGCATGTGTTATATACAAATGCCTTCTGCACTGGAGGTCATTTGAAGTTGAAAGAACAAGTGTCTTTGATCGCATCATTCAAACAATAGCTTCAGCAGTTGAGGCCCAGGATAATACTGATGTATTAGCATATTGGTTGTCTAATACATCCACGTTGTTGTTGCTACTCCAACGTACTCTCAAAGCAAGTGGAGCAGCTAGCTTAACGCCACAACGGCGAAGAACGGCATCATCATCTCTGTTTGGAAGAATGTCTCAAGGGCTAAGGGCGTCTCCCCAAACTGCTGGGTTGCCATTTCTAAATGGCCGAGGTCTGAGTAGACTGGATGATTTACGGCAAGTGGAAGCAAAATATCCAGCGCTGTTATTTAAGCAGCAGCTTACTGCCTTCCTGGAAAAAATATATGGAATGATAAGAGACAACCTTAAAAAGGAGATCTCTCCATTACTTGGACTTTGTATACAGGCCCCAAGGACCTCGCGTCAAAGTTTAGTGAAAGGACGCTCACAAGCCAATGCAGTTGCTCAGCAAGCTTTAATAGCTCACTGGCAAAGTATTGTGAAGAGCTTAAACAATTCTCTAAACATAATGAAGGCCAACTATGTGAGTTTCACGTCGAATTTTTGCTTTCCAGACTCTGATTGCGAACGTAATCTAATACGGTCCATTGGTATGACAGGTGCCTCCTTTCTTGGTCCGCAAAGTTTTCACTCAAATATTTTCATTCATCAATGTTCAACTATTCAACAGGTAAACCTCTCTTCCTCTCTTCCCCCTCCCCCCAAGAAAGAGAAGGGGGAAAAAAAAAGAGCATAG 2697 0.4168 MEQEEYTKEEIDWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFAQKLYQTFKNNKRFIKPKLSRTSFTISHYAGEVTYLADMFLDKNKDYVVAEHQDLLTASKCIFVAGLFPPSPQESSKSSKFSSIGSRFKGVLEAIRISCAGYPTRRTFYEFLNRFGVLAPEVLDGNYDDKVACQRILDKMGMKGYQIGKTKVFLRAGQMAELDARRAEVLGNAARVIQRQIRTHIARKEFKELRQAAVCLQSNLRGILARKLYEKLRREAAALKIEKNFKGYVARRSFLGIRSSAIIIQTGLRAMKARDEFRFRKQTKAAIHIQANLRRQIAFSYYKKLQKAAIVTQCGWRRRIARRELRMLKMAARETGALKEAKDKLEKRVEELTWRLQIEKRLRTDLEEEKTQEIAKLQDALHAMQIQLDEANARAVKEREAARKAIEEAPPVIKETPVLIQDTEKINSLTSEVNSLKESLLLEIRAKEEARKSQAEAEARNEELVKKVEDSDRKVEQLQELVQRLEEKISNSESENQVLRQQALAVSPTGKALTARPRTTIIQRIPENGNTPKEDAKIGSDMVLAVSNVREPESEGKPQKSLNEKQQENQDLLIKCISKDLGFSGGKPVAACVIYKCLLHWRSFEVERTSVFDRIIQTIASAVEAQDNTDVLAYWLSNTSTLLLLLQRTLKASGAASLTPQRRRTASSSLFGRMSQGLRASPQTAGLPFLNGRGLSRLDDLRQVEAKYPALLFKQQLTAFLEKIYGMIRDNLKKEISPLLGLCIQAPRTSRQSLVKGRSQANAVAQQALIAHWQSIVKSLNNSLNIMKANYVSFTSNFCFPDSDCERNLIRSIGMTGASFLGPQSFHSNIFIHQCSTIQQVNLSSSLPPPPKKEKGEKKRA 898
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211489g00038 898 Pfam Myosin head (motor domain) 140 208 IPR001609 GO:0003774|GO:0005524|GO:0016459
Stsc211489g00038 898 Pfam Myosin head (motor domain) 2 131 IPR001609 GO:0003774|GO:0005524|GO:0016459
Stsc211489g00038 898 ProSiteProfiles Myosin motor domain profile. 1 147 IPR001609 GO:0003774|GO:0005524|GO:0016459
Stsc211489g00038 898 ProSiteProfiles Dilute domain profile. 650 898 IPR002710 -
Stsc211489g00038 898 SMART iq_5 341 363 IPR000048 GO:0005515
Stsc211489g00038 898 SMART iq_5 245 267 IPR000048 GO:0005515
Stsc211489g00038 898 SMART iq_5 318 340 IPR000048 GO:0005515
Stsc211489g00038 898 SMART iq_5 222 244 IPR000048 GO:0005515
Stsc211489g00038 898 SMART iq_5 270 292 IPR000048 GO:0005515
Stsc211489g00038 898 SMART iq_5 293 315 IPR000048 GO:0005515
Stsc211489g00038 898 FunFam unconventional myosin-Va 225 273 - -
Stsc211489g00038 898 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 273 371 IPR027417 -
Stsc211489g00038 898 ProSiteProfiles IQ motif profile. 319 345 IPR000048 GO:0005515
Stsc211489g00038 898 Gene3D - 321 370 - -
Stsc211489g00038 898 Gene3D - 223 273 - -
Stsc211489g00038 898 Gene3D - 274 320 - -
Stsc211489g00038 898 ProSiteProfiles IQ motif profile. 294 323 IPR000048 GO:0005515
Stsc211489g00038 898 FunFam Myosin XI D 155 218 - -
Stsc211489g00038 898 SMART MYSc_2a 1 221 IPR001609 GO:0003774|GO:0005524|GO:0016459
Stsc211489g00038 898 Coils Coil 365 445 - -
Stsc211489g00038 898 MobiDBLite consensus disorder prediction 879 898 - -
Stsc211489g00038 898 ProSiteProfiles IQ motif profile. 225 249 IPR000048 GO:0005515
Stsc211489g00038 898 ProSiteProfiles IQ motif profile. 342 371 IPR000048 GO:0005515
Stsc211489g00038 898 FunFam unconventional myosin-Va 321 369 - -
Stsc211489g00038 898 Gene3D - 155 221 - -
Stsc211489g00038 898 PANTHER MYOSIN 1 813 - -
Stsc211489g00038 898 Pfam IQ calmodulin-binding motif 225 244 IPR000048 GO:0005515
Stsc211489g00038 898 Pfam IQ calmodulin-binding motif 344 363 IPR000048 GO:0005515
Stsc211489g00038 898 Pfam IQ calmodulin-binding motif 295 315 IPR000048 GO:0005515
Stsc211489g00038 898 Pfam IQ calmodulin-binding motif 247 266 IPR000048 GO:0005515
Stsc211489g00038 898 Coils Coil 482 539 - -
Stsc211489g00038 898 ProSiteProfiles IQ motif profile. 246 275 IPR000048 GO:0005515
Stsc211489g00038 898 ProSiteProfiles IQ motif profile. 271 297 IPR000048 GO:0005515
Stsc211489g00038 898 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 273 IPR027417 -
Stsc211489g00038 898 Gene3D - 1 149 - -
Stsc211489g00038 898 ProSiteProfiles Myosin motor domain profile. 148 220 IPR001609 GO:0003774|GO:0005524|GO:0016459
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211489g00038 Stsc-Chr211489 138680 145905 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211489g00038 1 875 Myosins gene family AT5G20490 70.511 0.0 1258
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211489g00038 K10357 - gmx:100777802 1402.88