Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211489g00033 ATGTCAAGTAATGGATATGTGGAGGGTGAAAAGAAGCCATTCTTCTTACTGAATCATCCCGATCCCCTGTTCAATTGCGAACAAGTCAATAGTACTCACTCAATGGCACATGCTCCTTTTCCTTACACTGAACCTTTTTTCGGTAGTTCATTACTTGCTTATGGTCATGGACCGCAGGCTGTTAGTCAACCCCCAATGTTGCCCCAAGTGATGGGATTAGGATCCCCCAGAATCGCACTACCACTTGATCTTGCTGAAGATGGCCCCATTTATGTCAATGCTAAACAATACCATGGTATACTGAGGAGGAGACAATCACGAGCAAAGCTCGAGGCTCAAAACAAGCTCATCAAAAGTCGTAAGCCCTATCTTCATGAGTCCCGACATCGCCATGCTTTGAAAAGGATTAGGGGATCCGGGGGACGCTTTCTCAGCTCTAAACAGCTGCAACTGTCTAATTCAGAACTTGTTAATGGTGCTCGTTCAGGCTTGAACCCTGTCAATGTATATCAAAAGAAAGAACCATCAGAGGTGGAAAGTCATCTCTCTAGAACAGGAGAAAACGCATCTTCCATCACAACGTGCTCTGACCTTACGAGTTTCTCTAGCAACGACATCAATTTCAGGCATCCTGAGCACAATTTCATGGGAAGTTCCCCAAACATGGGCGGAGCATCACAATGCAGTGGGGGACAACTACACACCTTTGGTTGTTGA 717 0.4561 MSSNGYVEGEKKPFFLLNHPDPLFNCEQVNSTHSMAHAPFPYTEPFFGSSLLAYGHGPQAVSQPPMLPQVMGLGSPRIALPLDLAEDGPIYVNAKQYHGILRRRQSRAKLEAQNKLIKSRKPYLHESRHRHALKRIRGSGGRFLSSKQLQLSNSELVNGARSGLNPVNVYQKKEPSEVESHLSRTGENASSITTCSDLTSFSSNDINFRHPEHNFMGSSPNMGGASQCSGGQLHTFGC 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211489g00033 238 ProSitePatterns NF-YA/HAP2 subunit signature. 91 111 IPR018362 GO:0003677|GO:0016602
Stsc211489g00033 238 PRINTS CCAAT-binding transcription factor subunit B signature 120 143 IPR001289 GO:0003700|GO:0006355
Stsc211489g00033 238 PRINTS CCAAT-binding transcription factor subunit B signature 89 111 IPR001289 GO:0003700|GO:0006355
Stsc211489g00033 238 Gene3D - 86 148 - -
Stsc211489g00033 238 ProSiteProfiles NF-YA/HAP2 family profile. 86 146 IPR001289 GO:0003700|GO:0006355
Stsc211489g00033 238 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 21 213 IPR001289 GO:0003700|GO:0006355
Stsc211489g00033 238 SMART cbf3 85 146 IPR001289 GO:0003700|GO:0006355
Stsc211489g00033 238 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 89 143 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211489g00033 Stsc-Chr211489 119199 121801 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211489g00033 57 159 CCAAT-HAP2 Transcription Factor Family AT1G54160 62.727 4.61e-39 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Stsc211489g00033 CBFB_NFYA 3.3e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211489g00033 K08064 - gmx:100792905 311.997