Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211489g00025 ATGGGTGATGTTCTAAGCCCCTATACACTTTCACCCCCACCTTCTTCATCATCTTCTTCAACCAAGTCCAACATTTTCATGCTATATTACGGCCTCGCAGTGGTTGGAACCGCCGCAATAGCTTTAGCACTTTACAACTACTTGGTCATCAGAAGGTGCAGCCGGCAACAACAACAACAACCGCAGCACGAAACAACAAATGGGTTGGTCGAGGTTGTCGTGTCAAGCAGCATGAGCTTCGAGAATTCTCAAACTAACTTGCTTTCAAGCTTCAAGTACAAGAAAGAAGAAGCAGAGAAAAAAGATAAAGCCCAAAAAAAAGAAGGTGGTGATGATGGTGGTGGTTCTTATGATGAGTGCCCTGTTTGTTTATCGGTTTTCGAAGAAGGTGAAGAAGTGAGGAAGCTTCCGAGGTGCAAGCACTCTTTTCATGCTCAGTGTATAGATATGTGGCTTTACTCTCACTTTAATTGCCCTGTTTGCCGTACACCGGTGGGGCCTTTCTTCCGCCGTATTCAGCCGGATACTAATAATAATTCCGTTGAGGAATTGCCGGAATCCGGTGGTGTGTGA 573 0.4538 MGDVLSPYTLSPPPSSSSSSTKSNIFMLYYGLAVVGTAAIALALYNYLVIRRCSRQQQQQPQHETTNGLVEVVVSSSMSFENSQTNLLSSFKYKKEEAEKKDKAQKKEGGDDGGGSYDECPVCLSVFEEGEEVRKLPRCKHSFHAQCIDMWLYSHFNCPVCRTPVGPFFRRIQPDTNNNSVEELPESGGV 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211489g00025 190 MobiDBLite consensus disorder prediction 1 21 - -
Stsc211489g00025 190 Pfam Ring finger domain 118 162 IPR001841 -
Stsc211489g00025 190 SUPERFAMILY RING/U-box 119 169 - -
Stsc211489g00025 190 ProSiteProfiles Zinc finger RING-type profile. 120 162 IPR001841 -
Stsc211489g00025 190 SMART ring_2 120 161 IPR001841 -
Stsc211489g00025 190 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 81 166 IPR013083 -
Stsc211489g00025 190 CDD RING-H2_EL5-like 119 162 - -
Stsc211489g00025 190 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 20 165 IPR044675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211489g00025 Stsc-Chr211489 95503 96308 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211489g00025 14 165 C3H Transcription Factor Family AT1G04360 32.164 7.94e-20 84.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211489g00025 - - gmx:102668213 163.696