Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211489g00022 ATGGCGACAACTCAGATGAGCAAGAAGCGAAAGTTCGTAGCTGACGGAGTTTTCTTCGCGGAGCTGAATGAGGTTCTTACCAGAGAGCTTGCTGAGGATGGATACTCCGGTGTTGAGGTTAGGGTTACCCCAATGCGTACCGAGATCATCATCAGAGCTACCAGAACCCAAGCAGTACTTGGTGAGAAGGGAAGGAGAATCAGGGAGCTAACATCGGTGGTGCAGAAGAGATTTAAGTTTCCCGAGAACAGTGTTGAATTGTATGCTGAGAGGGTCAACAACAGGGGCCTTTGCGCTATTGCTCAAGCCGAATCTCTTCGTTACAAGCTTCTTGGTGGCCTTGCTGTTAGGAGGGCCTGCTATGGTGTTTTGAGGTTTGTTATGGAAAATGGTGCCAAGGGATGCGAGGTCATTGTTAGTGGTAAGTTGAGGGCTCAGCGAGCTAAATCCATGAAGTTCAAGGATGGGTACATGATCTCCTCAGGGCAACCCGTCAAGGACTACATTGATTCTGCTGTAAGACATGTGCTCCTTAGACAGGGTGTTCTTGGTATCAAGGTTAAGATCATGCTTGATTGGGATCCTAAGGGGAAGCTTGGTCCCAAAACTCCCCTTCCAGATATTGTCACGATTCACCCTCCCAAGGAGGAAGAAGAATACGGCAGGATTCCTGTTGCTGCAGCTGCTGCTGTGCCTGCATTGGCAAATGATATTGAGGTCCCTGCGGTCCCAGTTGCATGA 741 0.4926 MATTQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQAVLGEKGRRIRELTSVVQKRFKFPENSVELYAERVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMENGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKDYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKLGPKTPLPDIVTIHPPKEEEEYGRIPVAAAAAVPALANDIEVPAVPVA 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211489g00022 246 ProSitePatterns Ribosomal protein S3 signature. 148 184 IPR018280 -
Stsc211489g00022 246 Pfam Ribosomal protein S3, C-terminal domain 107 189 IPR001351 GO:0003735|GO:0006412
Stsc211489g00022 246 Gene3D - 1 93 IPR015946 -
Stsc211489g00022 246 PANTHER 30S/40S RIBOSOMAL PROTEIN S3 7 199 - -
Stsc211489g00022 246 Gene3D - 94 232 IPR036419 -
Stsc211489g00022 246 FunFam 40S ribosomal protein S3 1 93 - -
Stsc211489g00022 246 SUPERFAMILY Prokaryotic type KH domain (KH-domain type II) 11 100 IPR009019 GO:0003723
Stsc211489g00022 246 ProSiteProfiles Type-2 KH domain profile. 22 93 IPR004044 GO:0003723
Stsc211489g00022 246 SUPERFAMILY Ribosomal protein S3 C-terminal domain 94 192 IPR036419 -
Stsc211489g00022 246 NCBIfam 30S ribosomal protein S3 9 211 IPR005703 GO:0003735|GO:0006412|GO:0015935
Stsc211489g00022 246 Pfam KH domain 21 94 IPR004044 GO:0003723
Stsc211489g00022 246 CDD KH-II_40S_S3 6 96 - -
Stsc211489g00022 246 FunFam 40S ribosomal protein S3 94 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211489g00022 Stsc-Chr211489 87452 89860 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211489g00022 3 218 Cytoplasmic Ribosomal Protein Gene Family AT3G53870 91.667 2.20e-147 409
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211489g00022 K02985 - gmx:100808705 422.55