Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211489g00021 ATGAGTGATACTAAATGGAAAATTGTTTGGTACAAAGATCGTGTCGCACTGAGGTTTCACCTGCCAACTGAGAGGCACGCATCAAGAGCTAAAGCCAACGTTGGTGTATCGATCTCTACCCTCCAATACTCCATCATGGCGACAACTCAGATGAGCAAGAAGCGAAAGTTCGTAGCTGACGGAGTTTTCTTCGCGGAGCTGAATGAGGTTCTTACCAGAGAGCTTGCTGAGGATGGATACTCCGGTGTTGAGGTTAGGGTTACCCCAATGCGTACCGAGATCATCATCAGAGCTACCAGAACCCAAGCAGTACTTGGTGAGAAGGGAAGGAGAATCAGGGAGCTAACATCGGTGGTGCAGAAGAGATTTAAGTTTCCCGAGAACAGTGTTGAATTGTATGCTGAGAGGGTCAACAACAGGGGCCTTTGCGCTATTGCTCAAGCCGAATCTCTTCGTTACAAGCTTCTTGGTGGCCTTGCTGTTAGGAGGGCCTGCTATGGTGTTTTGAGGTTTGTTATGGAAAATGGTGCCAAGGGATGCGAGGTCATTGTTAGTGGTAAGTTGAGGGCTCAGCGAGCTAAATCCATGAAGTTCAAGGATGGGTACATGATCTCCTCAGGGCAACCCGTCAAGGACTACATTGATTCTGCTGTAAGACATGTGCTCCTTAGACAGGGTGTTCTTGGTATCAAGGTTAAGATCATGCTTGATTGGGATCCTAAGGGGAAGCTTGGTCCCAAAACTCCCCTTCCAGATATTGTCACGATTCACCCTCCCAAGGAGGAAGAAGAATACGGCAGGATTCCTGTTGCTGCAGCTGCTGCTGTGCCTGCATTGGCAAATGATATTGAGGTCCCTGCGGTCCCAGTTGCATGA 876 0.4863 MSDTKWKIVWYKDRVALRFHLPTERHASRAKANVGVSISTLQYSIMATTQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQAVLGEKGRRIRELTSVVQKRFKFPENSVELYAERVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMENGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKDYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKLGPKTPLPDIVTIHPPKEEEEYGRIPVAAAAAVPALANDIEVPAVPVA 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211489g00021 291 NCBIfam 30S ribosomal protein S3 54 256 IPR005703 GO:0003735|GO:0006412|GO:0015935
Stsc211489g00021 291 Pfam KH domain 66 139 IPR004044 GO:0003723
Stsc211489g00021 291 FunFam 40S ribosomal protein S3 139 274 - -
Stsc211489g00021 291 Pfam Ribosomal protein S3, C-terminal domain 152 234 IPR001351 GO:0003735|GO:0006412
Stsc211489g00021 291 SUPERFAMILY Prokaryotic type KH domain (KH-domain type II) 56 145 IPR009019 GO:0003723
Stsc211489g00021 291 SUPERFAMILY Ribosomal protein S3 C-terminal domain 139 237 IPR036419 -
Stsc211489g00021 291 PANTHER 30S/40S RIBOSOMAL PROTEIN S3 52 244 - -
Stsc211489g00021 291 CDD KH-II_40S_S3 51 141 - -
Stsc211489g00021 291 Gene3D - 46 138 IPR015946 -
Stsc211489g00021 291 Gene3D - 139 265 IPR036419 -
Stsc211489g00021 291 FunFam 40S ribosomal protein S3 46 138 - -
Stsc211489g00021 291 ProSitePatterns Ribosomal protein S3 signature. 193 229 IPR018280 -
Stsc211489g00021 291 ProSiteProfiles Type-2 KH domain profile. 67 138 IPR004044 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211489g00021 Stsc-Chr211489 86598 89860 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211489g00021 48 263 Cytoplasmic Ribosomal Protein Gene Family AT3G53870 91.667 4.83e-147 410
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211489g00021 K02985 - gmx:100808705 422.55