Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211489g00017 ATGGGGAGAAGTAGCCCTTGTTGCTCAAAATCTCAGGACTTGAAAAGAGGTGCTTGGACTGCTGATGAAGACAAAATCCTCAGAGACTACATTAGGCTCCATGGCCATGGAAGATGGAGAAACCTTCCCCAAAAAGCAGGATTAAAAAGATGTGGGAAAAGTTGTAGACTGCGATGGTTGAACTATCTAAGACCAGACATCAAGAGAGGCAATATATCCTCCGACGAAGATGAACTCATCATCAGGCTTCACAACCTCCTTGGAAATAGGTGGTCTCTAATAGCTGGAAGGCTTCCGGGGCGAACAGACAATGAGATAAAGAACTATTGGAACACCAACCTGAGTAAGAGGATAAATAATAACAAGGATCACAACCAAAGAAGAAACACCTCTTCTTCTTATGTTCAACCCCCCCAAACAGAACCTACTCCTTCTAAGATTGACTTCCCTCTAATCCGAACAAAGGCTACCAAGTGCTCAAAGCCATTACTCATAAATAATAATAATCCACCACTCCCTCACAATGCAGCACAATCAACACCACTACCCTTGCTTCTGGAATCTGCTACTGCCAACAACGACAACCAGAACATGCAACCTGCTACAACTACTACTACTACTACTGGTAATAATGGGTTTGTGCCCTTCTTCAATGAAGGTGATGACAAAGAGCTACTCTCAAAGACAGATTTGCTCATAGATGATTATTGTAATCTTGATGATGCTGCTGGCGGCTTCCATGATCTTCTTATCAACTCGGATGTGTCTGATCTGATGGGCGACGAGCTATTGTTATCGCCTTATTCGGACCAACCCGCCACCGTCTTCTCTGATGACATCCTAAATCAATGGACACACAGCTATTTCGCTGCTACTGATGATGATCATCACGTTAATAATGATAATGATAATGATGATGTCTCAATCACCAACCGTCATTTTCACCAGTCAAATGACTAG 960 0.4292 MGRSSPCCSKSQDLKRGAWTADEDKILRDYIRLHGHGRWRNLPQKAGLKRCGKSCRLRWLNYLRPDIKRGNISSDEDELIIRLHNLLGNRWSLIAGRLPGRTDNEIKNYWNTNLSKRINNNKDHNQRRNTSSSYVQPPQTEPTPSKIDFPLIRTKATKCSKPLLINNNNPPLPHNAAQSTPLPLLLESATANNDNQNMQPATTTTTTTGNNGFVPFFNEGDDKELLSKTDLLIDDYCNLDDAAGGFHDLLINSDVSDLMGDELLLSPYSDQPATVFSDDILNQWTHSYFAATDDDHHVNNDNDNDDVSITNRHFHQSND 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211489g00017 319 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 190 - -
Stsc211489g00017 319 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 118 IPR017930 -
Stsc211489g00017 319 MobiDBLite consensus disorder prediction 116 148 - -
Stsc211489g00017 319 CDD SANT 73 114 IPR001005 -
Stsc211489g00017 319 FunFam Transcription factor TT2 72 141 - -
Stsc211489g00017 319 MobiDBLite consensus disorder prediction 293 319 - -
Stsc211489g00017 319 FunFam MYB-related transcription factor 15 68 - -
Stsc211489g00017 319 ProSiteProfiles Myb-like domain profile. 11 63 IPR001005 -
Stsc211489g00017 319 MobiDBLite consensus disorder prediction 116 142 - -
Stsc211489g00017 319 CDD SANT 18 63 IPR001005 -
Stsc211489g00017 319 Pfam Myb-like DNA-binding domain 16 63 IPR001005 -
Stsc211489g00017 319 Pfam Myb-like DNA-binding domain 69 114 IPR001005 -
Stsc211489g00017 319 SUPERFAMILY Homeodomain-like 13 110 IPR009057 -
Stsc211489g00017 319 Gene3D - 8 69 - -
Stsc211489g00017 319 SMART sant 15 65 IPR001005 -
Stsc211489g00017 319 SMART sant 68 116 IPR001005 -
Stsc211489g00017 319 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
Stsc211489g00017 319 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 63 IPR017930 -
Stsc211489g00017 319 Gene3D - 72 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211489g00017 Stsc-Chr211489 72731 73897 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211489g00017 1 139 MYB Transcription Factor Family AT4G09460 60.274 5.99e-58 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc211489g00017 Myb_DNA-binding 1.1e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211489g00017 K09422 - gmx:100802704 280.026