Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211489g00001 ATGAAGATGACATTGAGTTCTTTGTTCCTAAGTTGCTACAAGGGTGATAATAATAATTCAGCTGATTACCCACCCTCTCCAAAGAAATCAAACAACAAGGTGGTGGCAACCAAGGGAAATAGTACTACTACTAGCACTAGGAGCGGTTCCAACAGAGTTTCCATTACCGATTTGAGTTTTCCAAGTGCTACCACGCTCTCTGAGGATCTCTCCATATCTCTAGCAGGGACCAATCTTTATGTGTTCTCACTCGCGGAACTCAAGATCATTACTCAGAGCTTCTCATCAAGTAACTTTCTGGGTGAAGGAGGGTTCGGCCCTGTCCACAAAGGCTTCATTGATGACAAGATAAGGCCTTCTCTTAAGCCTCAGCCTGTTGCTGTTAAGCTTTTGGATTTGGATGGTACTCAGGGCCACAAGGAGTGGTTGACTGAAGTTGTGTTTCTGGGTCAACTGAGTCACCCGCACCTTGTGAAATTGATTGGATATTGCTGTGAAGACGAACATAGGCTTCTGGTATATGAGTATTTACCACGAGGCAGCTTAGAAAATCAACTCTTTAGAAGGTACTCAGCGTCATTGCCATGGTCAACAAGAATGAAGATTGCTGTTGGAGCAGCGAAAGGTCTATCATTTCTCCATGAACAAAAGAAGCCAGTGATCTACAGAGATTTCAAGGCTTCAAACATCTTGTTAGACTCGGATTACAATGCAAAGCTATCTGATTTCGGGTTGGCAAAAGACGGTCCAGAAGGAGATGACACACACGTATCGACACGTGTGATGGGGACACAAGGATATGCAGCACCAGAATACGTGATGACAGGTCACTTGACAGCAATGAGTGATGTGTACAGCTTTGGAGTGGTGTTGTTGGAGATGTTAACAGGAAGAAGATCAGTGGACAAGGGTCGTCCATCAAGAGAACAGAACCTTGTTGAATGGGCAAGGCCAGCACTCAACGATCCAAGGAAGCTTCCAAGGATAATGGATCCAAGGCTTGAGGGTCAGTTCTCTGAGATGGGTGCTAAGAAGGCTGCAGCCCTGGCTTATCAGTGCCTTAGTCATAGGCCTAGGAACCGTCCTTCTATGGCTACTGTGGTTAAGATCCTTGAGCCCCTTCAGGACTATGATGATGTCCCTATTGGACCCTTTGTTTACACTGTTCCACCAGATACTAATAGCACCGAAGCTGAAACTCCCAAGGAGAAGAGGAGGCACCATCACCATCACCATTCTCATTCTAGGAGGCCTCATCCTCTAAAGTCCCCCAAGACTTCACCAGATTCACAGAATAATCATCATCATCATGGTAGAACAACAAGTTCCTCTACTTCACCCGATGACAAATCCAATGCATCATCGCGGCGTGCAAACTAG 1380 0.4572 MKMTLSSLFLSCYKGDNNNSADYPPSPKKSNNKVVATKGNSTTTSTRSGSNRVSITDLSFPSATTLSEDLSISLAGTNLYVFSLAELKIITQSFSSSNFLGEGGFGPVHKGFIDDKIRPSLKPQPVAVKLLDLDGTQGHKEWLTEVVFLGQLSHPHLVKLIGYCCEDEHRLLVYEYLPRGSLENQLFRRYSASLPWSTRMKIAVGAAKGLSFLHEQKKPVIYRDFKASNILLDSDYNAKLSDFGLAKDGPEGDDTHVSTRVMGTQGYAAPEYVMTGHLTAMSDVYSFGVVLLEMLTGRRSVDKGRPSREQNLVEWARPALNDPRKLPRIMDPRLEGQFSEMGAKKAAALAYQCLSHRPRNRPSMATVVKILEPLQDYDDVPIGPFVYTVPPDTNSTEAETPKEKRRHHHHHHSHSRRPHPLKSPKTSPDSQNNHHHHGRTTSSSTSPDDKSNASSRRAN 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211489g00001 459 MobiDBLite consensus disorder prediction 404 421 - -
Stsc211489g00001 459 MobiDBLite consensus disorder prediction 437 453 - -
Stsc211489g00001 459 ProSiteProfiles Protein kinase domain profile. 94 375 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211489g00001 459 PANTHER OS01G0588500 PROTEIN-RELATED 44 375 - -
Stsc211489g00001 459 Pfam Protein tyrosine and serine/threonine kinase 98 371 IPR001245 GO:0004672|GO:0006468
Stsc211489g00001 459 Gene3D Phosphorylase Kinase; domain 1 58 176 - -
Stsc211489g00001 459 ProSitePatterns Serine/Threonine protein kinases active-site signature. 220 232 IPR008271 GO:0004672|GO:0006468
Stsc211489g00001 459 MobiDBLite consensus disorder prediction 20 50 - -
Stsc211489g00001 459 CDD STKc_IRAK 100 374 - -
Stsc211489g00001 459 FunFam Probable serine/threonine-protein kinase PBL8 177 385 - -
Stsc211489g00001 459 SUPERFAMILY Protein kinase-like (PK-like) 70 373 IPR011009 -
Stsc211489g00001 459 FunFam Serine/threonine-protein kinase BIK1 61 176 - -
Stsc211489g00001 459 Gene3D Transferase(Phosphotransferase) domain 1 177 381 - -
Stsc211489g00001 459 MobiDBLite consensus disorder prediction 385 459 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211489g00001 Stsc-Chr211489 1810 4212 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211489g00001 82 405 Glycoside Hydrolase AT3G07070 51.212 2.74e-105 317
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Stsc211489g00001 PK_Tyr_Ser-Thr 3.6e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211489g00001 - - gmx:100799411 674.855