Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211487g00031 ATGGCTATGCTACAAACCATTGTTACTGTGATCCTTCTCCTTATGCTTCTTCTCATCTTCATCTTCCTTTTCTACCTCTTCAAACCATGGCGCTTCTTCTTCCGCTCCTCCCCTTCCCACTCTTGCCTCAAGGTAGGTGTTGGTGTTGGTGTTGGTGATGACCTAGAGAGGCCTCTTGTTCTCGACCAAGGTGCTGCCAACGATGCCAATTTCTCCTCTAATGATAATAATATTAATCAGAGCAATGAATTGTCAAGAGATTATGATCTCGAAGGTGCTTGTCACCCTAACGAACTTCATTTTCGCTCTCATGGAGCACTTGGCCTTGCTCGCAAGCTGAGGCTTCCGATTCGCAATGCGCCACCACAAGGGGATGCTTTGGTTTTAGATGTTATGTCTGCAGACTCTGTTGATGTTGGCCAAACCCTCAAGCTTTCTCCAGCTCTCTTAGCTGAAGCACAAAAGCATCAGCAACTCAATCTCCAGAATGATAGGATTCAGGACTCTGTGCAGAGAGATATCCTTGGTCAAAGAAGTTGCCTTACTCTGGAGGTTATCAGTGGTCCTTCTCGAGGGATTCGATTTTCTGTACAGTCTATGAATTCTTCTAGTCTTCCCCTCACCCTGGGAAGAGTTCCTCCAAGCGATTTGGTGATAAACGATTCAGAAGTTTCGGGAAAACATGCCTTGATAAAGTGGAATTTGGATAAAATGAAATGGGAGTTGGTGGATATGGGCAGCTTAAATGGAACACTTTTGAATTCTACGCCAATCAACCATCCAGACACTGGAAGCAGGCTTTGGGGTGATCCGATCAATCTTGCCGATGGCGATATCATAACACTTGGATCAACATCGAAAATAAGTGTTCATGTTACTGCACAAAATGAGCAACACATTCCATTTGGAGTTGGTATGGCATCGGATCCCATGGCTTTGCGTAGAGGAGCAAAGAAGCTTGCTATGGAAGATGTTTGCTATTATCATTGGCCTCTGCCTGGGCTGGATCAGTTTGGGCTATTTGGTATCTGTGATGGCCACGGTGGAGATGGGGCTGCTAAATCTGCAAGCAAACTTTTTCCTGAGATAATTGCTAATATATTATTGGATTCATCAAAAAGAGAGAGGGTTTTATCACTTCATGATGCTTCAGAAATTCTGCGAGATGCATTTTCTCAAACAGAAGCATCGTTGAATAATTACTATGAGGGATGTACAGCAACAGTGCTTCTGGTGTGGGCTGATGGTGAAAATTTCTTTGCTCAATGTGCAAATGTTGGAGACTCTGCCTGTGTTATGAGTGTTAATGGGAAACAAATCAAGATGTCGGAAGATCACAAGATAACAACTTATTCTGAAAGACAGAGAATTGAAGAGACTGGCGAACCATTGAAAGATGGGGAAACACGTTTATATGGTATTAATCTTGCAAGGATGCTTGGGGACAAATTCCTGAAACAGCAGGATTCCCGGTTCAGCTCAGAGCCTTATATTAGTCAAGTGGTGCATATTGATCAAGCAAGCAGGGCTTTTGCCATTCTAGCTAGTGATGGGCTTTGGGATGTCATCAGCATGAAGAAGGCAATTCAGCTAGTGCTTCAGATGAGGGAGAGATACTGTACAGAGAGAGAGAATTTGGCGGAAAAGATTGCTAGTTCATTGTTGGGTGAGGCTAAAACACTCAGAACAAAGGACAATACCTCTGTAATTTTCTTAGATTTTGATAGCTTCAACAGATTTTCTTGTAAAGTTGAATCCTAG 1761 0.4316 MAMLQTIVTVILLLMLLLIFIFLFYLFKPWRFFFRSSPSHSCLKVGVGVGVGDDLERPLVLDQGAANDANFSSNDNNINQSNELSRDYDLEGACHPNELHFRSHGALGLARKLRLPIRNAPPQGDALVLDVMSADSVDVGQTLKLSPALLAEAQKHQQLNLQNDRIQDSVQRDILGQRSCLTLEVISGPSRGIRFSVQSMNSSSLPLTLGRVPPSDLVINDSEVSGKHALIKWNLDKMKWELVDMGSLNGTLLNSTPINHPDTGSRLWGDPINLADGDIITLGSTSKISVHVTAQNEQHIPFGVGMASDPMALRRGAKKLAMEDVCYYHWPLPGLDQFGLFGICDGHGGDGAAKSASKLFPEIIANILLDSSKRERVLSLHDASEILRDAFSQTEASLNNYYEGCTATVLLVWADGENFFAQCANVGDSACVMSVNGKQIKMSEDHKITTYSERQRIEETGEPLKDGETRLYGINLARMLGDKFLKQQDSRFSSEPYISQVVHIDQASRAFAILASDGLWDVISMKKAIQLVLQMRERYCTERENLAEKIASSLLGEAKTLRTKDNTSVIFLDFDSFNRFSCKVES 586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211487g00031 586 Pfam FHA domain 208 283 IPR000253 GO:0005515
Stsc211487g00031 586 ProSitePatterns PPM-type phosphatase domain signature. 340 348 IPR000222 GO:0043169
Stsc211487g00031 586 Pfam Protein phosphatase 2C 320 567 IPR001932 -
Stsc211487g00031 586 Gene3D - 176 312 - -
Stsc211487g00031 586 Gene3D - 313 584 IPR036457 -
Stsc211487g00031 586 SMART FHA_2 206 258 IPR000253 GO:0005515
Stsc211487g00031 586 CDD PP2Cc 315 574 IPR001932 -
Stsc211487g00031 586 FunFam Protein phosphatase 2C 70 311 581 - -
Stsc211487g00031 586 PANTHER PROTEIN PHOSPHATASE 2C 298 571 IPR015655 GO:0004722|GO:0006470
Stsc211487g00031 586 CDD FHA_PP2C70-like 181 291 - -
Stsc211487g00031 586 FunFam Protein phosphatase 2C 70 176 310 - -
Stsc211487g00031 586 SUPERFAMILY SMAD/FHA domain 180 287 IPR008984 GO:0005515
Stsc211487g00031 586 SUPERFAMILY PP2C-like 314 576 IPR036457 -
Stsc211487g00031 586 ProSiteProfiles Forkhead-associated (FHA) domain profile. 207 258 IPR000253 GO:0005515
Stsc211487g00031 586 SMART PP2C_4 297 572 IPR001932 -
Stsc211487g00031 586 ProSiteProfiles PPM-type phosphatase domain profile. 303 574 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211487g00031 Stsc-Chr211487 166746 171072 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211487g00031 1 576 PP2C-type Phosphatase Gene Family AT5G19280 54.992 0.0 604
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211487g00031 K01090 - gmx:100170643 827.009