Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211487g00024 ATGACGAACGATATCGCGCTCAAGTCTTCTCCTTCCACTCTCCTCGCTCGCTTTAACGCCATACTCCAACACCGCCACTGCAACGTCAGGGCTTTCTCCACCCAAGAAATCGTTCGGACTTATGCCCTATTGCTATCGGAACTCACCTCCAATGTGAAGCCCCTCATTACCGATCTCACTATCATCGCCGGCCAGCAAAGGGAACACGCCAACGGCATCGCCGATGCTATTTGCAACCGTATTCTCGAGGTGCCTGCTGATCAAAAACTTCCTTCTCTCTATCTTCTGGACAGTATTGTGAAGAATTTTGGACAGGAATATGTTAAACACTTCTCTTTACGTCTATCTCAAGTTTACTGCGAGACATACAGGAAGGTCCAGCCCAATTTGCATTCTGTTATGCAACGTCTCTTTGGTACCTGGTCAAACATCTTCCCTTCCTCTGTCCTAAGAAATATTGAAGCTCAATTGCAATCTTCACCATCAGTTAATAATCAACAATCCTTTGTTAATCACCTCGGGACATATGATTTTGGTGGACTTATTCCTGGGGCACATGTTAAACCACAATCCTTGCAGCAGATGGAACACTCTAGTTCAATTATGGTTAATGTTGGTGGTGATAGGTTGGACTCAACCAGAACTGTAGGCAATACAAGAGAAGAAGGGTTGAATGAGTGGCAGCAAAAGAGGTTTTCTGGTGATGGTTGGAACATATTTCAAACTTCTATGACATATAATCTCAATGATGAACAACAACGTCAAAGTCCAAGAGCTCTTATTGAGGCATATGGTTGTGACAAAAGCCGTGAAACTCCTAGCAGTAAGATTTTGTTGGTTGAGCAGACTGGTAGAAATGGTTTAGGGAACAAGTTTCCATTAGCATCATGGCAGAACACTGAAGAAGAGGAGTTTGATTGGGAAGATGTGAATCCAGGATTAGTAGACTTTAGCGGAAGCAGCAGCTCTATGCAATCAAGTCTTAAGTTCTCAAGGAAAAGGAAGATATCTAATCATCTATCTAATATGGGGGCTCCTCTCCCTGCTGTCAATGCTCATGCTGCTCGTCCTTCCGGCTTGAATCCACAATTTCCATTGCAAAAACGTCCTAGGAGTCAGTTTGAAGCAATAAATGCTAATAATAACACCAATATGGGGCATGGTCCAAATAGAAGTCTGTTTATGCATGAACATTTGGCTACAAATCAACCTGGACTGATTTCCTCTACCCTGCAAAATCATGGACAAGCACCTCAACTACAGTTTCTTCCACCTCAAGTTCCATCTTCAACACAAATTAGTCATGGGAGATATTTTCAAGGACATGGTGCCTCAATAAGTACACCCGTGTCAAATCCATTACCTGTTATGCAATTCCCCTTGCAAGGCCAAAGTAGTACAAATGCTGTGATGAAAAGTGAACAATCATCTGCATATTTTAATTTGATTAGTTCACTTCTGAACCACGGTGTGATCTCGGTAACTAAACCGCCCACTGGACTGGATTCAATTGGGACGGAGTTTGATCCAGATATTTTGAAGGTTCGTCATGAATGTGCAATCAGAGGCTTATATGGTGATCTTCCAAGACAATGCACAAGTTGTGGTGTGCGATTCAAAGGGCAAGACGAGCACAGTAGTCATATGGATTGGCATGTGATTAGGAACCGAATGTGTAAAAGCCGTAATAAGCAGAAGGGCTTCCAAAAGTGGTTTGTAAGTGGGAGCATGTGGCTAAGTAGTGGTGCAGAATTATCCACTCCAGGTCCAGGGTTCTTGCCTACTAGTGATGACAAGACAGAGGAAATAAAAGAAGATGATCAAGAATTGTGCGTTCCTGCTGAAGAGGATCAGAGTAGATGTGCATTATGCGGGGAGGCTTTCGATGAGTTTTACAGCGATGAAATGGATGAGTGGATGTATAGAGGAGCGACATACCTTAATGCAGCACACATGGGAACAACAACATTGTTAGCCTCCATGTCCATGGACAGACATCACTTAGGCCCCATTGTTCATTCCAAATGCAGATCTCCCTCTCACACTAACTCAACCAACATGGAGCCTACCAAGAATGTAGTAAGAGAAAAAGAATGCGGGTCGATCAAAGATCAGTTTTGTGCACCGTTAATTACGACTTTCTAA 2145 0.4317 MTNDIALKSSPSTLLARFNAILQHRHCNVRAFSTQEIVRTYALLLSELTSNVKPLITDLTIIAGQQREHANGIADAICNRILEVPADQKLPSLYLLDSIVKNFGQEYVKHFSLRLSQVYCETYRKVQPNLHSVMQRLFGTWSNIFPSSVLRNIEAQLQSSPSVNNQQSFVNHLGTYDFGGLIPGAHVKPQSLQQMEHSSSIMVNVGGDRLDSTRTVGNTREEGLNEWQQKRFSGDGWNIFQTSMTYNLNDEQQRQSPRALIEAYGCDKSRETPSSKILLVEQTGRNGLGNKFPLASWQNTEEEEFDWEDVNPGLVDFSGSSSSMQSSLKFSRKRKISNHLSNMGAPLPAVNAHAARPSGLNPQFPLQKRPRSQFEAINANNNTNMGHGPNRSLFMHEHLATNQPGLISSTLQNHGQAPQLQFLPPQVPSSTQISHGRYFQGHGASISTPVSNPLPVMQFPLQGQSSTNAVMKSEQSSAYFNLISSLLNHGVISVTKPPTGLDSIGTEFDPDILKVRHECAIRGLYGDLPRQCTSCGVRFKGQDEHSSHMDWHVIRNRMCKSRNKQKGFQKWFVSGSMWLSSGAELSTPGPGFLPTSDDKTEEIKEDDQELCVPAEEDQSRCALCGEAFDEFYSDEMDEWMYRGATYLNAAHMGTTTLLASMSMDRHHLGPIVHSKCRSPSHTNSTNMEPTKNVVREKECGSIKDQFCAPLITTF 714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211487g00024 714 ProSiteProfiles CID domain profile. 33 161 IPR006569 -
Stsc211487g00024 714 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 36 370 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Stsc211487g00024 714 ProSitePatterns Zinc finger C2H2 type domain signature. 532 552 IPR013087 -
Stsc211487g00024 714 CDD CID_Pcf11 38 159 IPR047415 -
Stsc211487g00024 714 Gene3D - 28 159 IPR008942 -
Stsc211487g00024 714 SUPERFAMILY ENTH/VHS domain 34 159 IPR008942 -
Stsc211487g00024 714 Pfam CID domain 52 151 IPR006569 -
Stsc211487g00024 714 FunFam polyadenylation and cleavage factor homolog 4 30 158 - -
Stsc211487g00024 714 SMART 558neu5 36 158 IPR006569 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211487g00024 Stsc-Chr211487 124724 128533 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211487g00024 431 688 C2H2 Transcription Factor Family AT4G04885 50.000 3.32e-70 243
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211487g00024 K14400 - qsa:O6P43_031220 543.888