Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211487g00022 ATGTTTCCCACAAACGTGTTTGATTCTCATCAGCAGCACATGATGCTTGATATGTCATCGTCTCACAATGAGAGTGATTTGGGAATAAGGACAAGAGATGAGGATGAGTTCTTCGACATTAAATCTGCTACTGAGATGATGGACGCTCCTTCGGGTGATGAGCAAGATCCCAACCAACGACCCAAAAAGAAGGGCTACCATCGCCACACACAGCACCAAATACAAGAAATGGAAGCGTTCTTCAAGCAGTGCCCACACCCAGATGACAAGCAAAGAAAGGAGCTGAGCCGTGAGCTGGGATTAGAGCCATTGCAAGTGAAGTTTTGGTTCCAAAACAAGCGGACACAGATGAAGGCACAACATGAGAGGCACGAAAACGCTATATTAAAGGCTGAGAATGAGAAGCTTCGTGCTGAGAACAGCAGATACAAGGAGGCGCTAAGCAATGCTACTTGCCCCAACTGTGGAGGACCTGCTGCCCTTGGTGAAATGTCCTTTGACGAGCAGCACCTCCGGATTGAGAATGCTCGTCTCAAACAAGAGATTGATAGGATTTCGGCAATAGCGGCCAAATATGTTGGGAAGCCAGTGACTTCGTCGTCTCACTCTCATTCTCGCTCGCTTGATCTTGGAGTTGGTAGCTACGGTGGAGGAGCACAGCCCTCAGCCGGTGGTGGCATGGTTGGAGAGATGTACGGTGGAAGTGAGCTTCTGAGGAGTCTCCCAGTTCCTTGTGATTCTGACAAACCCAGGATTGTGGAGCTTGCTGTGGCAGCCATGGAGGAACTAACAAGATTAGCCCAGGTTGGAGATCCTTTGTGGGTCCAAAGCAACCAGCACAGTACTGAGATTCTAAACGAAGATGAATATTTGAGGACTTTCCCTCCTAGAGGTCTAGGCCCTAAAGCACTGGGCTTGAGATCTGAATCGTCCAGGGAATCCGCTGTTGTTATGATGAATCACACCAAACTTGTTGAGATACTAATGGATGTGAACCAATGGTCAACAATGTTTTGTGGTATTGTGTCAAGAGCGTTGACACTTGAAGTGCTTTCAACGGGTGTGGCAGGAAACTACAACGGAGCCTTGCAAGTGATGTCAGCTGAGTTCCAGGTGGCATCACCGCTTGTTGCAAGCAGAGAGAACTATTTCGTGAGGTACTGTAAAGAACACCCGGATGGGAGATGGGCAGTTGTAGATGTGTCATTGGAGAATGATAATAATGGCAAGGTGAGAGGAAGCAGCAGAAGAAGGCCCTCTGGTTGCATAATTGAAGAACTCCCGAATGGATACTCCAAGGTGACATGGATTGAGCATGTTGAAGTGGATGACACAGCCGTGCACACCATATACAAGCCATTAGTCAAGTGTGGCCTCGCCTTTGGAGCTAAGAGGTGGATCGCCACATTACAGAGACAATCCGAACGTCTTGCTAGTTACATTATCGGAGGAGGAGCAGGGGAGCTGTGTGGTACGAGTTCGGAGGGGAGGAGGAGCATGCTGAAGCTGGCTGAGAGAATGGTGATGAGCTTCTGCACTGGGGTGGGAGCTTCAACTGCACATGCATGGACAACTCTGTCGTCGGATATGGATGATGTGAGGGTTATGACCAGGAAGAGCGTGGATGACCCTGGAAGACCCCCTGGGATTGTCCTCTGCGCTGCTACTTCATTCTCCCTCCCTCTTCCTCCCAACACTCTCTTTCATTTTCTCAGAGATCAAAACTCCCGAAGCCAGTGGGATATTCTCTCCAACGGAGGTCTTGTTCAAGAAATCGCTCACATATCGACGGCTTCCAACTCTCTTTCTCTGCTTCGCGTCAATAGTGTAAATTCGAGCCAAAGCAACATGCTGATACTTCAGGAGAGTTGCAGCGACTGCAGTGGCTCCTATGTTGTATACGCGCCGGTGGACATGGTTGCCATGAATGTGGTTCTTAGTGGAGGGGATCCAGATTACGTGGCCCTGCTTCCCTCGGGTTTTGCCATTCTTCCTGATGGCCTTCCTGCTGCTTCTTCTGGAGGCTCTCTCCTCACTGTGGCTTTTCAGATCTTGGTTGACTCCGCCCCAACCGCTAAGCTATCTCTGGGTTCAGTGACCACCGTTAACACTTTAATTAAGTGCACCGTTGAAAGGATCAAAGCTGCTGTCATTTCAGACCACCACCACCCCCTCATTTCACAACCTAGCTAA 2193 0.4938 MFPTNVFDSHQQHMMLDMSSSHNESDLGIRTRDEDEFFDIKSATEMMDAPSGDEQDPNQRPKKKGYHRHTQHQIQEMEAFFKQCPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKAQHERHENAILKAENEKLRAENSRYKEALSNATCPNCGGPAALGEMSFDEQHLRIENARLKQEIDRISAIAAKYVGKPVTSSSHSHSRSLDLGVGSYGGGAQPSAGGGMVGEMYGGSELLRSLPVPCDSDKPRIVELAVAAMEELTRLAQVGDPLWVQSNQHSTEILNEDEYLRTFPPRGLGPKALGLRSESSRESAVVMMNHTKLVEILMDVNQWSTMFCGIVSRALTLEVLSTGVAGNYNGALQVMSAEFQVASPLVASRENYFVRYCKEHPDGRWAVVDVSLENDNNGKVRGSSRRRPSGCIIEELPNGYSKVTWIEHVEVDDTAVHTIYKPLVKCGLAFGAKRWIATLQRQSERLASYIIGGGAGELCGTSSEGRRSMLKLAERMVMSFCTGVGASTAHAWTTLSSDMDDVRVMTRKSVDDPGRPPGIVLCAATSFSLPLPPNTLFHFLRDQNSRSQWDILSNGGLVQEIAHISTASNSLSLLRVNSVNSSQSNMLILQESCSDCSGSYVVYAPVDMVAMNVVLSGGDPDYVALLPSGFAILPDGLPAASSGGSLLTVAFQILVDSAPTAKLSLGSVTTVNTLIKCTVERIKAAVISDHHHPLISQPS 730
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211487g00022 730 MobiDBLite consensus disorder prediction 45 71 - -
Stsc211487g00022 730 ProSitePatterns 'Homeobox' domain signature. 95 118 IPR017970 GO:0000981|GO:0006355
Stsc211487g00022 730 ProSiteProfiles 'Homeobox' domain profile. 60 120 IPR001356 GO:0003677
Stsc211487g00022 730 SUPERFAMILY Bet v1-like 495 714 - -
Stsc211487g00022 730 ProSiteProfiles START domain profile. 523 606 IPR002913 GO:0008289
Stsc211487g00022 730 Pfam Homeodomain 63 118 IPR001356 GO:0003677
Stsc211487g00022 730 Pfam START domain 255 476 IPR002913 GO:0008289
Stsc211487g00022 730 Gene3D - 309 475 IPR023393 -
Stsc211487g00022 730 CDD homeodomain 63 121 IPR001356 GO:0003677
Stsc211487g00022 730 Gene3D - 50 136 - -
Stsc211487g00022 730 CDD START_ArGLABRA2_like 249 475 - -
Stsc211487g00022 730 SUPERFAMILY Bet v1-like 246 478 - -
Stsc211487g00022 730 FunFam Homeobox-leucine zipper protein HDG1 51 136 - -
Stsc211487g00022 730 ProSiteProfiles START domain profile. 245 479 IPR002913 GO:0008289
Stsc211487g00022 730 SMART START_1 254 476 IPR002913 GO:0008289
Stsc211487g00022 730 FunFam Homeobox-leucine zipper protein GLABRA 2 254 475 - -
Stsc211487g00022 730 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 59 717 IPR042160 -
Stsc211487g00022 730 SUPERFAMILY Homeodomain-like 47 120 IPR009057 -
Stsc211487g00022 730 SMART HOX_1 62 124 IPR001356 GO:0003677
Stsc211487g00022 730 Coils Coil 114 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211487g00022 Stsc-Chr211487 108528 111276 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211487g00022 1 720 Homeobox Transcription Factor Family AT4G04890 71.733 0.0 1056
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Stsc211487g00022 START 1.8e-52 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211487g00022 K09338 - gmx:100815499 1076.62