Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211487g00019 ATGGCTACTGAGCAACAACAACAGCCTCTTCTAAACAATAATAAACCCCAGAAATCTCTATCAAGAACAGCTTGGTTACTACTCTTCACAACTCTAGTTGTAGTTGGTGTCCTCGCCTCATCAGCCCTTATTGCTAATTATCCAAATCTCAGCATAATCAAACCCAGTTCCGATCTCTGTCAATATGCCGTTAACAGGGAAACCTGCTTAGCCCATGTCTCTGAAATAGCACCCCAAGGCCACGTTCTGGCCACCACAAAAGACCAAAACTATAATATTCTCCAAACCTTCCTTGTCAAGTCCACCTCACCCATCCAAGAAGCCATGGCCACGGCCAACGCCATCAAGATCCGCCTCAACACCACCCCACGCCAGCAAGCAGCTTTGGAGCTCTGTGCAGACCTCATGGACTTGTCCATTTCCAGAGTGTACGACTCCATCGTGGCTCTCACTAACCGCACCACTCTCTCCCTCCAAGACGCGCACACATGGCTCAGCACCGTCCTCACTAACCATGCCACTTGCTTGGATGCCTTAGACGGCTCTGCTCGTGCTATCATGGAGCCTCAACTCTCCGACCTCATGTCCAGGGCAAGAACCTCTCTCGCCATGCTTGTTGCCGTCTTGCCACCGCCAAACGGCGGCGATGATGAGAAATTGAACGGAGAGTTTCCGTCATGGGTGACACGCAGCGATCGGAGGCTTTTGGAGTCTGTGAGTGCTGATATAAAGGCTAATGTTGTGGTGGCTAAGGATGGAAGCGGCAATTTCAAGACTGTGGCAGAAGCTGTGGCTTCCGCACCTAACAATGGAAAAACAAGGTATGTAATCTATGTGAAGAAGGGAACGTACAAAGAGAATGTTGAGATCGGTAGTAAGAAGAAGAACGTCATGCTCGTTGGTGACGGTATGGATCAAACAATAATCACCGGCAGCTTGAACTTTGTCGATGGAACTGGCACCTTCCAATCCGCCACCGTTGCGGCCGTTGGTGATGGATTTATAGGACAAGACATTTGGTTTCAAAACACGGCGGGCCCAGAGAAGCACCAGGCGGTGGCACTCCGCGTGGGGGCAGACACGTCGGTGATCAACCGGTGCCGCATCGACGCGTACCAGGACACTCTGTACGCCCACAGCAACAGGCAGTTCTACCGTGATTGCGTCATCACCGGCACCATTGACTTCATCTTTGGAAACGCAGCAGTTGTGCTCCAGAACTGCAACCTGGTGGCACGAAAGCCCCTCAGTAACCAAAAGAACATGGTAACTGCCCAAGGACGCGAAGACCCGAACCAGAACACAGGCACCTCCATTCAGCAGTGTCAAATAACTGCCAGTTCCGATCTGAAGCCCGTGGTGGGGTCCATCAAGACTTATCTGGGGCGTCCGTGGAAGAAGTACTCTCGAACGGTTGTGATGCAATCTTCAATAGAGGGGCATATTGACCCCGCGGGGTGGGCTGAATGGGACGATAAGAGTAAAGATTTTTTGGAAACATTGTATTATGGAGAGTACATGAACAGTGGTGCTGGTGCTGGCACCAGCAAGAGGGTTACGTGGACTGGTTACCATATCATCACCAGTGCCGCAGAGGCTTCCAAGTTCACGGTGGCACAGCTCATCCAAGGTGATGTTTGGTTGAAGAACACCGGTGTCAACTTCATCACAGGCCTCTAG 1680 0.5131 MATEQQQQPLLNNNKPQKSLSRTAWLLLFTTLVVVGVLASSALIANYPNLSIIKPSSDLCQYAVNRETCLAHVSEIAPQGHVLATTKDQNYNILQTFLVKSTSPIQEAMATANAIKIRLNTTPRQQAALELCADLMDLSISRVYDSIVALTNRTTLSLQDAHTWLSTVLTNHATCLDALDGSARAIMEPQLSDLMSRARTSLAMLVAVLPPPNGGDDEKLNGEFPSWVTRSDRRLLESVSADIKANVVVAKDGSGNFKTVAEAVASAPNNGKTRYVIYVKKGTYKENVEIGSKKKNVMLVGDGMDQTIITGSLNFVDGTGTFQSATVAAVGDGFIGQDIWFQNTAGPEKHQAVALRVGADTSVINRCRIDAYQDTLYAHSNRQFYRDCVITGTIDFIFGNAAVVLQNCNLVARKPLSNQKNMVTAQGREDPNQNTGTSIQQCQITASSDLKPVVGSIKTYLGRPWKKYSRTVVMQSSIEGHIDPAGWAEWDDKSKDFLETLYYGEYMNSGAGAGTSKRVTWTGYHIITSAAEASKFTVAQLIQGDVWLKNTGVNFITGL 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211487g00019 559 CDD PMEI-like_4 69 208 - -
Stsc211487g00019 559 ProSitePatterns Pectinesterase signature 1. 271 290 IPR018040 -
Stsc211487g00019 559 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 58 198 IPR035513 -
Stsc211487g00019 559 Gene3D - 239 559 IPR012334 -
Stsc211487g00019 559 Gene3D Invertase/pectin methylesterase inhibitor family protein 57 209 IPR035513 -
Stsc211487g00019 559 SMART PMEI_2 51 204 IPR006501 GO:0004857
Stsc211487g00019 559 ProSitePatterns Pectinesterase signature 2. 390 399 IPR033131 -
Stsc211487g00019 559 NCBIfam pectinesterase inhibitor domain 105 187 IPR006501 GO:0004857
Stsc211487g00019 559 SUPERFAMILY Pectin lyase-like 243 558 IPR011050 -
Stsc211487g00019 559 PANTHER PECTINESTERASE 37 549 - -
Stsc211487g00019 559 Pfam Plant invertase/pectin methylesterase inhibitor 59 204 IPR006501 GO:0004857
Stsc211487g00019 559 Pfam Pectinesterase 246 545 IPR000070 GO:0030599|GO:0042545
Stsc211487g00019 559 FunFam Pectinesterase 240 559 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211487g00019 Stsc-Chr211487 92492 95581 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211487g00019 8 555 Carbohydrate Esterase AT1G11580 55.694 0.0 593
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211487g00019 K01051 - gmx:100815836 780.785