Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211487g00009 ATGGACAAGGACAAAGACACATGTTTAGTTATTATGTATTTGTTGGACATTATTTGTGTGTTACTGTTATGTGTTGCAAGAAGCACAGCCACAGACCCTGTTGACACGTATTGTCCAACTGATCAATTCCCATCATATAGCAGAAACAGCACCTTTGACAATAACCTGAAGCTTCTTTTGGGGTTGCTGCCCTCCAACACGGCTTCCAACAATGGCTTCTACAACACATCAGTGGGAGATGGGGAAGACAAGGTGTACGGACAAGCACTTTGCAGAGGAGACATCATCAGCAACAGAAACTCCACAGTGTGCAAGGAATGCATTGAGAAAGCAAGTCAAGATTTAACAAAGAGGTGCAACTGTGAAGATGCAATCATATGGTATGAGCTATGCCAAGTCCGCTACTCCTTTCAGATGTTCTTCTCATCTATGACTTACACCGGAAAGTATCCCAATCGTAATCTTCAGGAGAAGAATGTCTCAGACCCTGCTGGATTTGAATTTGATCATGTCTTGGCATATCTTATGACCAACCTCTCTCAAGAAGCTGCTTTTCTTCCTGCCAACAACATGTTTGCAGATGGGGAGATTCAGTATTCTGCTTCTCATGGTGTCAAGAACAAGAAGCTTTATGGATTAGTCCAGTGTACCAGGGACATCTCTCAAGCAGACTGCGCCTCTTGCTTGAATTCTGCCTTCACAGAACTTACTAAATGCTGCTCCTTTCGAGAAGGCGGCGTCATTCTTAGCCGCACTTGCAATGTGAGGTTTGAATCCTATATGTTCTTCAATGATTCATCAGCAAAGATCATGATCTTCCCGGCTTCCAAAAGAGGAAGCAAATGGAAGCCATGGATGTTTGCATTGACAATTGGTGCTTCACTCTTAATATTAGCACTTATTATTGGGTTGTGCACTGCTTCTCTAAGACATAAAAGGGACACAGACATGGAGACAGATGAAGAAAAGATCGAAAGGACGCTGCTACAACAGTTGGCAAGCTCCAAGAGTGTAGCAGTTACACAGGAAGGTGACCTGATTAGTTCTGATGAACTGCTGTTCATGAGCTTAGCAGCCATTAAGGATGCCACTGATGACTTCTCTGACAAAAACAAACTGGGACAAGGAGGATTTGGTGCAGTGTACAAGGGTGTTCTACCAGATGGCAGTGAAGTTGCAGTTAAAAGGTTATCAAGAAAGTCTTGGCAAGGCATAGAAGAATTGAAAAATGAGGTCATACTCATTGCCAAGCTTCAGCACAAGAATCTGGTGAGGCTGTTGGGGTGTGGCTTAGAGGGAGATGAAAAGCTTCTCATATATGAATTCATGTCAAACAAAAGCCTTGATCAATTTATCTTTGATCCAGAGAAACGTTCCGAGTTCGATTGGCAGACTTGGTATGGCATCATCAGTGGCATTGCAAGAGGACTGCTTTATCTTCATGAAGAGTCTCGGCTGAAAATCATTCACAGGGATTTAAAGCCAAACAATGTGTTGTTGGACCATGACATGGTTGCCAAAATATCAGATTTCGGTATGGCTAGAATATTTTTCGAGAATCAGAATACAGCAAATACCAAGAGAGTTGTGGGAACATAG 1599 0.4271 MDKDKDTCLVIMYLLDIICVLLLCVARSTATDPVDTYCPTDQFPSYSRNSTFDNNLKLLLGLLPSNTASNNGFYNTSVGDGEDKVYGQALCRGDIISNRNSTVCKECIEKASQDLTKRCNCEDAIIWYELCQVRYSFQMFFSSMTYTGKYPNRNLQEKNVSDPAGFEFDHVLAYLMTNLSQEAAFLPANNMFADGEIQYSASHGVKNKKLYGLVQCTRDISQADCASCLNSAFTELTKCCSFREGGVILSRTCNVRFESYMFFNDSSAKIMIFPASKRGSKWKPWMFALTIGASLLILALIIGLCTASLRHKRDTDMETDEEKIERTLLQQLASSKSVAVTQEGDLISSDELLFMSLAAIKDATDDFSDKNKLGQGGFGAVYKGVLPDGSEVAVKRLSRKSWQGIEELKNEVILIAKLQHKNLVRLLGCGLEGDEKLLIYEFMSNKSLDQFIFDPEKRSEFDWQTWYGIISGIARGLLYLHEESRLKIIHRDLKPNNVLLDHDMVAKISDFGMARIFFENQNTANTKRVVGT 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211487g00009 532 ProSiteProfiles Gnk2-homologous domain profile. 34 140 IPR002902 -
Stsc211487g00009 532 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 46 532 - -
Stsc211487g00009 532 Gene3D Phosphorylase Kinase; domain 1 327 442 - -
Stsc211487g00009 532 ProSiteProfiles Gnk2-homologous domain profile. 148 262 IPR002902 -
Stsc211487g00009 532 Gene3D Transferase(Phosphotransferase) domain 1 443 532 - -
Stsc211487g00009 532 ProSitePatterns Serine/Threonine protein kinases active-site signature. 488 500 IPR008271 GO:0004672|GO:0006468
Stsc211487g00009 532 Pfam Protein kinase domain 368 532 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211487g00009 532 ProSitePatterns Protein kinases ATP-binding region signature. 373 395 IPR017441 GO:0005524
Stsc211487g00009 532 ProSiteProfiles Protein kinase domain profile. 367 532 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211487g00009 532 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase B120 443 532 - -
Stsc211487g00009 532 FunFam Cysteine-rich receptor-like protein kinase 10 329 442 - -
Stsc211487g00009 532 SMART serkin_6 367 530 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211487g00009 532 SUPERFAMILY Protein kinase-like (PK-like) 349 532 IPR011009 -
Stsc211487g00009 532 Gene3D - 32 140 IPR038408 -
Stsc211487g00009 532 Gene3D - 149 262 IPR038408 -
Stsc211487g00009 532 Pfam Salt stress response/antifungal 38 137 IPR002902 -
Stsc211487g00009 532 Pfam Salt stress response/antifungal 164 260 IPR002902 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211487g00009 Stsc-Chr211487 44681 46525 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211487g00009 15 532 Receptor kinase-like Gene Family AT4G05200 39.405 1.70e-117 360
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Stsc211487g00009 Pkinase 1.3e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211487g00009 - - adu:107488598 882.093