Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211487g00008 ATGTCAAACAAAAGCCTTGATCAATTTATCTTTGATCCAGAGAAACGTTCCGAGTTCGATTGGCAGACTTGGTATGGCATCATCAGTGGCATTGCAAGAGGACTGCTTTATCTTCATGAAGAGTCTCGGCTGAAAATCATTCACAGGGATTTAAAGCCAAACAATGTGTTGTTGGACCATGACATGGTTGCCAAAATATCAGATTTCGGTATGGCTAGAATATTTTTCGAGAATCAGAATACAGCAAATACCAAGAGAGTTGTGGGAACATATGGATATATGGCTCCAGAGTATGCAATGGAAGGACTTTTCTCAGTAAAATCGGACGTCTTCAGCTTTGGTGTCATGTTGCTTGAAATTATCAACGGAAAAAGAAACAGTGGATTCTACACAACAGAACTTGCCCCAACTCTACTGGCATATGCATGGCAGCTGTGGAATGAAGAGAGGAAGTTGGAATTTGTGGATCCAGTGATGTTGGAATCGTGTGTGGGCTGTGAAGAAGTTGTAATAAGGTGCATGCACATTGGACTTCTGTGTGTGCAGGAAGATCCAGAGCTGAGGCCTAACATGTCAAGCGTGGTGGTTCTCCTAGGAAGTAAACAAATGGATCTTCCAAAACCAAGTCAACCAGCATTTTCATTGAGTAGAGCCTTTCATGTTGATCTAAATCCAGGTCCAGCCACTGCAACAAATCCTTCTGTGAATGGGGGGAGTATATTGTCCAGTGTTTTACCTAGATGA 744 0.4234 MSNKSLDQFIFDPEKRSEFDWQTWYGIISGIARGLLYLHEESRLKIIHRDLKPNNVLLDHDMVAKISDFGMARIFFENQNTANTKRVVGTYGYMAPEYAMEGLFSVKSDVFSFGVMLLEIINGKRNSGFYTTELAPTLLAYAWQLWNEERKLEFVDPVMLESCVGCEEVVIRCMHIGLLCVQEDPELRPNMSSVVVLLGSKQMDLPKPSQPAFSLSRAFHVDLNPGPATATNPSVNGGSILSSVLPR 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211487g00008 247 FunFam Uncharacterized protein 1 204 - -
Stsc211487g00008 247 Pfam Protein tyrosine and serine/threonine kinase 3 196 IPR001245 GO:0004672|GO:0006468
Stsc211487g00008 247 SUPERFAMILY Protein kinase-like (PK-like) 1 198 IPR011009 -
Stsc211487g00008 247 ProSiteProfiles Protein kinase domain profile. 1 213 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211487g00008 247 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 1 218 - -
Stsc211487g00008 247 Gene3D Transferase(Phosphotransferase) domain 1 1 209 - -
Stsc211487g00008 247 ProSitePatterns Serine/Threonine protein kinases active-site signature. 46 58 IPR008271 GO:0004672|GO:0006468
Stsc211487g00008 247 SMART serkin_6 1 198 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211487g00008 Stsc-Chr211487 43709 45429 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211487g00008 1 213 Receptor kinase-like Gene Family AT4G23150 58.685 1.87e-87 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Stsc211487g00008 PK_Tyr_Ser-Thr 1.7e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211487g00008 - - adu:107488598 466.848