Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211487g00007 ATGTTTCTCTCCTTCAACAACAAACCTTTATTGTTGATTCTAATCTCAATTGCTATGCTGATGAAGCACAGTAATTGTATACCAACATACAACTACCATGCCTGTAGAGATCCAATATTGCAGAATGCAAGCAACAGTGATATTTTCCAATCTGATCTAACTTCTCTTTTGGGTAATTTATCTTTAGCAGCTTCCTCTAAGAGCTTCTACAATGCTAGTATTTCCCCAAGGCTCTATGGGCTCTTCCTCTGCAGGGGTGACGTTTCAGCTGAAACCTGCAAAAACTGTACCATAACTGCCAGCCAAGAAATCAAAAGCAAGTGTGCATGGAATTCTAGCGGAGTAATCTGGTACGACGAATGCATGGTTAGGTACTCCAAGGAAAATTTCTTTGGGGTGGCACAAACTAGTCCATTAGTATTCGTTTGGAACACAAACTACGAAAATAGAACTTCACCTACTGAAACTCGTCTGAATGCACAAGCACTGATGTACCCGTTGATACAAAATGCCTCAAGTAGTAAGAGGCTGTTCGAATCAAGGGAATCTACCGTGTATGATGATGGGTCCCGGAGATATGGGTTAGCACAGTGTACAAGGGATATAGATCTCTCTTCATGCGAATCTTGTTTGACTCTGTTGATGAATAAATCTGATTTGTGTTGCAAACGCAAAGTTGGGTGGCGCTTACTGGCTCCTTCTTGCTATATCAGGTACGAGAAGGATATCTTCTATGAGGATAATTTAGCGCCACTGGTGGTATCACCTAATACTCCAAAACCAAAACTACCATGTAAAGATAACAGGAAACGTGTTAAAAAACTCCTTATACTCTACATGCTCATTCCAATTACAAGTTGTGGCCTCTTCTATCTCATCTGGTCTTCAAATCAACTCAGGAAAAGACAACAACAAGGGGAAGGGTTTACCGATGTAATTCAAGTAAATAACTTTAGAAGTTCAAGTAGATCATACTTTAAGGATCAAGGAATGGATGCTACACATGAAGACAACAAAGAAGTACAGTACTTTAGTTTGAGCACGATTAAGGTTGCTACCAACAGTTTTTCTGATGACAATAAGCTAGGTGAAGGGGGCTTTGGGCCCGTTTTCAAGGGGAAGTTAAGTAATGGCAAGGATATAGCGGTTAAAAGGCTTTCATTCAAATCAAGGCAAGGCGTTGAAGAATTCAAGAATGAAGTGACGTTGATTGCAAAACTTCAGCACAAAAATCTTGTTAGGCTCTTGGGATGCTGCATTGATAGAAACGAAAAACTTCTTGTCTATGAGTACATGGCCAACACTGGTCTTGATGCTTTTCTATTTGATCAAAACAAACGTGAAAAGCTGGACTGGCCTAAGCGGGAAAAAATTATAAATGGAATTGCAAGAGGTCTTTCGTATCTACACGAGGATTCCCGCTTGAAAATTATTCATAGAGATTTGAAAGCTAGCAATGTATTGTTAGATGAAGATATGAATCCAAAGATATCAGATTTTGGGACTGCTAGAATTTTTTGTAGTGATCAAATTGAAGCAACCACGGAAAAGGTTGTTGGTACATATGGTTATATGGCACCGGAATATGCTTTGGAAGGGTCGTTTTCCGTCAAATCTGACGTTTACAGCTTTGGAGTACTAATCCTGGAAATTTTAAGCGGAAGAAAGAACATTAGTTTTTATCGGCCAGGCTGTGGCCGTGATCAAACCCTAACCCTTATATCCTACGCATGGCGACTCTGGAATGACGGCAAGGAGCTGGAATTTTTGGATCATATCCTAGTCAATGCTTGCCCCATAGATGTGGCATTAAGATGGATTCATATTGGACTTTTGTGTGTTCAAGAAAGACCTAAAGATAGGCCTACCATGTCCTCAGTCATTTTGATGCTTGCAAGTTCTACAAGCCTGCCTCAGCCACTTGCACCTCCATTCTCTTTAAGCAACTATTATGATAATATAAGTGATCAATCTTCAACAACCGAAGAAGAAGATGATGATATGGAATTTCAACTCTCTTCAATTAAGAGTAATGATACGTGA 2043 0.3979 MFLSFNNKPLLLILISIAMLMKHSNCIPTYNYHACRDPILQNASNSDIFQSDLTSLLGNLSLAASSKSFYNASISPRLYGLFLCRGDVSAETCKNCTITASQEIKSKCAWNSSGVIWYDECMVRYSKENFFGVAQTSPLVFVWNTNYENRTSPTETRLNAQALMYPLIQNASSSKRLFESRESTVYDDGSRRYGLAQCTRDIDLSSCESCLTLLMNKSDLCCKRKVGWRLLAPSCYIRYEKDIFYEDNLAPLVVSPNTPKPKLPCKDNRKRVKKLLILYMLIPITSCGLFYLIWSSNQLRKRQQQGEGFTDVIQVNNFRSSSRSYFKDQGMDATHEDNKEVQYFSLSTIKVATNSFSDDNKLGEGGFGPVFKGKLSNGKDIAVKRLSFKSRQGVEEFKNEVTLIAKLQHKNLVRLLGCCIDRNEKLLVYEYMANTGLDAFLFDQNKREKLDWPKREKIINGIARGLSYLHEDSRLKIIHRDLKASNVLLDEDMNPKISDFGTARIFCSDQIEATTEKVVGTYGYMAPEYALEGSFSVKSDVYSFGVLILEILSGRKNISFYRPGCGRDQTLTLISYAWRLWNDGKELEFLDHILVNACPIDVALRWIHIGLLCVQERPKDRPTMSSVILMLASSTSLPQPLAPPFSLSNYYDNISDQSSTTEEEDDDMEFQLSSIKSNDT 680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211487g00007 680 ProSiteProfiles Gnk2-homologous domain profile. 29 130 IPR002902 -
Stsc211487g00007 680 CDD STKc_IRAK 362 631 - -
Stsc211487g00007 680 SUPERFAMILY Protein kinase-like (PK-like) 339 654 IPR011009 -
Stsc211487g00007 680 Pfam Salt stress response/antifungal 151 241 IPR002902 -
Stsc211487g00007 680 Pfam Salt stress response/antifungal 41 127 IPR002902 -
Stsc211487g00007 680 ProSiteProfiles Gnk2-homologous domain profile. 136 244 IPR002902 -
Stsc211487g00007 680 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 49 665 - -
Stsc211487g00007 680 Pfam Protein tyrosine and serine/threonine kinase 359 629 IPR001245 GO:0004672|GO:0006468
Stsc211487g00007 680 MobiDBLite consensus disorder prediction 656 680 - -
Stsc211487g00007 680 ProSitePatterns Serine/Threonine protein kinases active-site signature. 477 489 IPR008271 GO:0004672|GO:0006468
Stsc211487g00007 680 ProSiteProfiles Protein kinase domain profile. 356 642 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211487g00007 680 SMART serkin_6 356 607 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211487g00007 680 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 320 431 - -
Stsc211487g00007 680 Gene3D Phosphorylase Kinase; domain 1 330 431 - -
Stsc211487g00007 680 Gene3D - 139 244 IPR038408 -
Stsc211487g00007 680 Gene3D - 28 130 IPR038408 -
Stsc211487g00007 680 Gene3D Transferase(Phosphotransferase) domain 1 432 639 - -
Stsc211487g00007 680 FunFam Uncharacterized protein 432 636 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211487g00007 Stsc-Chr211487 40102 43493 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211487g00007 12 662 Receptor kinase-like Gene Family AT4G05200 42.836 1.39e-172 508
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Stsc211487g00007 PK_Tyr_Ser-Thr 4.2e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211487g00007 - - aip:107640338 813.913