Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211487g00004 ATGGCTTCAAATAATAATAATTCAAGCTCGAATTCGAAGAAGAACAAGGGTCGCCAAAAGATCGAGATGAAGAAGATGACGAAGGAGAGCAACTTGCAAGTGACGTTCTCAAAGCGTCGCGGTGGGCTTTTCAAGAAAGCCAGCGAGCTAAGCACCCTTTGCGGTGTTGACGTGGCACTCATCGTGTTCTCCCCCGGGAACAAGGCCTATTCCTTTGGCCACCCAAGCGTGGAATCCCTAATCGAGAGCTTCATCGAAAGTGGGGGCCCACCGCCACACTTGGACTCCTCCGCGGCCGTCCATCATCACTTCGTGGAGGAGCACGATGACCTGAACGCATTACTGATGCACATCAATGACGAGATCGAAGCGGAGAGGAAGCTGCTAGAGGAGATGAACCGGATGCGGAAGGAGGCAGAGAGAAAGTGGTGGTGGGCTGCTCCTATTGATGAGATGAGTGCTCCAAAACTAAATGAATATAAGGCGGCGCTGGAGGAGCTCAAGAAGAGCGTTACGTGTCACTTCGAGAAGCGTCGTGGTCAAGACAACCACGACGATCCTGCTACTGTAGTGGCAGCGGCCGTCATGAGTTCTAATAGTAATAACATGGTCCCGGTGGTGCCTGTGCCTATGCTGCCAATGCCGTTGCCGCCAATATTTTTCTCATCGCTGTTTCAAAACTCTCACTCTCATCATCAAATGCATAATAATAATAACAATAATAATTATCATCATCAAAGATATGAAGATGAGAGCCCGTATCAGTTTTATAGCTACACTGCTATGATGCAGGGAGGAGGATCACCATTTGGACCATACACTACTGCTCGTAACAACAGCGGCTTCTGA 849 0.4912 MASNNNNSSSNSKKNKGRQKIEMKKMTKESNLQVTFSKRRGGLFKKASELSTLCGVDVALIVFSPGNKAYSFGHPSVESLIESFIESGGPPPHLDSSAAVHHHFVEEHDDLNALLMHINDEIEAERKLLEEMNRMRKEAERKWWWAAPIDEMSAPKLNEYKAALEELKKSVTCHFEKRRGQDNHDDPATVVAAAVMSSNSNNMVPVVPVPMLPMPLPPIFFSSLFQNSHSHHQMHNNNNNNNYHHQRYEDESPYQFYSYTAMMQGGGSPFGPYTTARNNSGF 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211487g00004 282 Gene3D - 97 191 - -
Stsc211487g00004 282 Gene3D - 29 89 IPR036879 GO:0003677|GO:0046983
Stsc211487g00004 282 CDD MADS_MEF2_like 17 84 IPR033896 GO:0000977|GO:0045944
Stsc211487g00004 282 SMART madsneu2 16 75 IPR002100 GO:0003677|GO:0046983
Stsc211487g00004 282 SUPERFAMILY SRF-like 17 89 IPR036879 GO:0003677|GO:0046983
Stsc211487g00004 282 MobiDBLite consensus disorder prediction 1 29 - -
Stsc211487g00004 282 ProSiteProfiles MADS-box domain profile. 16 76 IPR002100 GO:0003677|GO:0046983
Stsc211487g00004 282 PANTHER MADS BOX PROTEIN 18 172 - -
Stsc211487g00004 282 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 25 72 IPR002100 GO:0003677|GO:0046983
Stsc211487g00004 282 FunFam Agamous-like MADS-box protein AGL62 28 93 - -
Stsc211487g00004 282 Coils Coil 115 142 - -
Stsc211487g00004 282 PRINTS MADS domain signature 53 74 IPR002100 GO:0003677|GO:0046983
Stsc211487g00004 282 PRINTS MADS domain signature 18 38 IPR002100 GO:0003677|GO:0046983
Stsc211487g00004 282 PRINTS MADS domain signature 38 53 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211487g00004 Stsc-Chr211487 19080 19928 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211487g00004 13 173 Type I MADS-box Gene Family AT5G60440 48.795 2.43e-47 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Stsc211487g00004 SRF-TF 1.5e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211487g00004 - - adu:107488602 315.849